View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_low_53 (Length: 226)
Name: NF7960_low_53
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2589835 - 2590041
Alignment:
| Q |
1 |
ttaataattaaggtaaaatcataaatcacctttttaaagctttcatcactactttttcacaaatagccttcttttggttttggttttggactttttaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2589835 |
ttaataattaaggtaaaatcataaatcacctttttaaagctttcatcactactttttcacaaatagccttcttttggttttggttttggactttttaata |
2589934 |
T |
|
| Q |
101 |
tatatgtgacaaaactaaaactatatataagggtctatttgcttaagagagtgaaacttaaaattggtaatttatgattttacttgtgcttggttgctat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2589935 |
tatatgtgacaaaactaaaactatatataagggtctatttgtttaaaagagtgaaacttaaaattggtaatttatgattttacttgtgcttggttgctat |
2590034 |
T |
|
| Q |
201 |
ataagag |
207 |
Q |
| |
|
||||||| |
|
|
| T |
2590035 |
ataagag |
2590041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 20903799 - 20903847
Alignment:
| Q |
143 |
ttaagagagtgaaacttaaaattggtaatttatgattttacttgtgctt |
191 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
20903799 |
ttaagagagtgaaactaataattggtaatttatgattttacttgtgctt |
20903847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 20922402 - 20922448
Alignment:
| Q |
145 |
aagagagtgaaacttaaaattggtaatttatgattttacttgtgctt |
191 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
20922402 |
aagagagtgaaactaataattggtaatttatgattttacttgtgctt |
20922448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 41336960 - 41337002
Alignment:
| Q |
145 |
aagagagtgaaacttaaaattggtaatttatgattttacttgt |
187 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
41336960 |
aagagagtgaaactaataattggtaatttgtgattttacttgt |
41337002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University