View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_54 (Length: 225)
Name: NF7960_low_54
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_54 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 3392 - 3587
Alignment:
| Q |
13 |
ataatacttgtaggaacatttcttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
3491 |
T |
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| Q |
113 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
3587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 3392 - 3587
Alignment:
| Q |
13 |
ataatacttgtaggaacatttcttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
3491 |
T |
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| Q |
113 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
3587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 44371460 - 44371265
Alignment:
| Q |
13 |
ataatacttgtaggaacatttcttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44371460 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtcttagctgaaggaacaaaaagactcacattta |
44371361 |
T |
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| Q |
113 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371360 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagactttt |
44371265 |
T |
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