View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_6 (Length: 532)
Name: NF7960_low_6
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 41497777 - 41497262
Alignment:
| Q |
1 |
tttatggaattgctgtgaagaatgaggatccaactccaagttcatcactagcagttcaactaggaaccaagtttgcaaatgcggttaacacagtcaaaag |
100 |
Q |
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| T |
41497777 |
tttatggaattgctgtgaagaatgaggatccaactccaagttcatcactagcagttcaactaggaaccaagtttgcaaatgcggttaacacagtcaaaag |
41497678 |
T |
|
| Q |
101 |
aaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattgtttcttgataatcttacagggaggtccgaggtatcacttgcn |
200 |
Q |
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| T |
41497677 |
aaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattgtttcttgataatcttacagggaggtccgaggtatcacttgca |
41497578 |
T |
|
| Q |
201 |
nnnnnnnnnnngttgtagtccaacaatccaggattaattaaaccgttgtatttcaaatgataatcttacaagagggccgcggtatcatcaatgaatttaa |
300 |
Q |
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| T |
41497577 |
aaaaagaaaaagttgtagtccaacaatccaggattaattaaaccgttatatttcaattgataatcttacaagaggtccgcggtatcatcaatgaatttaa |
41497478 |
T |
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| Q |
301 |
tgtgctgggtttgatggaaatgcgggttgatatcattgctcttgttgagccgacaccctaatctagcattgaaaaatcgagtttattctataaagcaaga |
400 |
Q |
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| T |
41497477 |
tgtgctgggtttgatggaaatgcgggttgatatcattgctcttgttgagccgagaccctaatctagcattgaaaaatcgagtttattctataaagcaaga |
41497378 |
T |
|
| Q |
401 |
ttgagtagaaatgataattggttcgctctgaagcaattgatgaatgtttcgtaacaactaatccagtctcatgagaatggttttcatgcttttgtgttaa |
500 |
Q |
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| T |
41497377 |
ttgagtagaaatgataattggttcgctctgaagcaattgatgaatgttttgtaacaactaatccagtctcatgagaatggttttcatgcttttgtgttaa |
41497278 |
T |
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| Q |
501 |
tttatagaattgtact |
516 |
Q |
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| T |
41497277 |
tttatagaattgtact |
41497262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 41501792 - 41501627
Alignment:
| Q |
15 |
gtgaagaatgaggatccaactccaagttcatcactagcagttcaactaggaaccaagtttgcaaatgcggttaacacagtcaaaagaaaattttctttca |
114 |
Q |
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| T |
41501792 |
gtgaagaatgaggatccaagtccaagttcatcactagtagttcaacaaaagaccaagtttgtaaatgcggttgacacggtcaaaagaaattttgctttca |
41501693 |
T |
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| Q |
115 |
gcgacagtgaaacctccacttctt---cttcctctgatgattcattgtttcttgataatcttacag |
177 |
Q |
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| T |
41501692 |
gcgacagtgaaacctccacttcttcttcttcctccgatgattcgtcgtttcttgataatcttacag |
41501627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 33078116 - 33077947
Alignment:
| Q |
5 |
tggaattgctgtgaagaatgaggatccaactccaagttcatcactagcagttcaactaggaaccaagtttgcaaatgcggttaacacagtcaaaagaaaa |
104 |
Q |
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| T |
33078116 |
tggaattgccgtgaagaatgagcttccaaattcaagttcatcaattgcagttcaacaaa-aaccaagtttgcaaatgttgttgacacagtcaaaagaaaa |
33078018 |
T |
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| Q |
105 |
ttttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattgtttcttgataatcttac |
175 |
Q |
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| T |
33078017 |
tattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattgtatctcgatattcttac |
33077947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 41506992 - 41506885
Alignment:
| Q |
35 |
tccaagttcatcactagcagttcaactaggaaccaagtttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccact |
134 |
Q |
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| T |
41506992 |
tccaagtccatcgctagtagttcaacaaaaaaccaagtttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccact |
41506893 |
T |
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| Q |
135 |
tcttcttc |
142 |
Q |
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| T |
41506892 |
tcttcttc |
41506885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 41467452 - 41467374
Alignment:
| Q |
78 |
aatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcat |
156 |
Q |
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| T |
41467452 |
aatgcagttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgacttctacttcctccgatggttcat |
41467374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 41466895 - 41466854
Alignment:
| Q |
408 |
gaaatgataattggttcgctctgaagcaattgatgaatgttt |
449 |
Q |
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| T |
41466895 |
gaaatgataattggttagctcaaaagcaattgatgaatgttt |
41466854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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