View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_7 (Length: 509)
Name: NF7960_low_7
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 48936419 - 48936905
Alignment:
| Q |
6 |
tttggtgttacctctcaacatacccccttactaaggtgtttccacagataaacgacgaatgattccttacgattgataaaaagatggtataagaaattct |
105 |
Q |
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| T |
48936419 |
tttggtgttacctctcaacataccccctttctaaggtgtttccacagataaacgacgaatgattccttacgattgataaaatgatggtataagaaattct |
48936518 |
T |
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| Q |
106 |
tggacattatgattgatagaaggatttcataatagcccatatgaagctgtgtctagtttcatgtctgtatagtttcatccctgtaagtctagacttatca |
205 |
Q |
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| T |
48936519 |
tggccattatgattgatagaaggatttcataatagtccatatgaagctgtgtctagtttcatgtctgtatagtttcatccctgtaagtctagacttatca |
48936618 |
T |
|
| Q |
206 |
tcaataatcgttgaagtatcaaatattgaacatagaatcgaaatgcagaatagggaaaccaggtatcataatctatcatatcaaacaaagaatcagaaat |
305 |
Q |
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| T |
48936619 |
tcaataatcgttgaagtatcaaatattgaacatagaatcgaaatgcagaatagggaaaccaggtatcataatctatcatatcaaacaaagaatcagaaat |
48936718 |
T |
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| Q |
306 |
aatggtactattatgaaatgacaatcttctttgtttagagaaatgacaaatttcacatgctttttggacatgcaagcaacatagtaatcaatgtgatatg |
405 |
Q |
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| T |
48936719 |
aatggtactattatgaaatgacaatcttctttgtttagagaaatgacaaatttcacatgctttttggacatgcaagcaacatagtaatcaatgtgatatg |
48936818 |
T |
|
| Q |
406 |
tggcactagcacctaagttcaagattaaaaagatgttgaatttttacctgaaattgaagaggaagtgatgatattatctgtagcaac |
492 |
Q |
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| T |
48936819 |
tggcactagcacctaagttcaagattaaaaagatgttgaatttttacctgaaattgaagaggaagtgatgatattatctgtagcaac |
48936905 |
T |
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