View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_high_12 (Length: 286)
Name: NF7961_high_12
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 19501456 - 19501713
Alignment:
| Q |
21 |
ttctgtacctttgtgtccattctctgtctcannnnnnnngcgattggattcttcgattatttaggcgacgcatatatatctcgaggcttgcacacgtgca |
120 |
Q |
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| T |
19501456 |
ttctgtacctttatgtccattctcagtctcattattcttgcgattgaattcttcaattatttaggcgacgcttatatatctcgcggcatgtacacatgca |
19501555 |
T |
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| Q |
121 |
accacacatgcaacctccctatattcaaagtcggctcagagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacattac |
220 |
Q |
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| T |
19501556 |
accacacatgcaacctccctaacttcaaagtcggctcagagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacattac |
19501655 |
T |
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| Q |
221 |
cgtctctgtcgataatccaacacagtattcccgtgtttattacgacgccgtctctgct |
278 |
Q |
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| T |
19501656 |
cgtctctgtcgataatcccacacagtattcccgtgtttattacgacgctgtctctgct |
19501713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 19517740 - 19517632
Alignment:
| Q |
170 |
caactcactaaccattagcaacacccaactcacagccgagttcaacattaccgtctctgtcgataatccaacacagtattcccgtgtttattacgacgcc |
269 |
Q |
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| T |
19517740 |
caactcactaaccattagcaacacccaactcacagccgagttcaacattacggtctctgccgataaccccacagagtattcccgtgtttactacgacgca |
19517641 |
T |
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| Q |
270 |
gtctctgct |
278 |
Q |
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| T |
19517640 |
gtctctgct |
19517632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 19493566 - 19493625
Alignment:
| Q |
159 |
gagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacatt |
218 |
Q |
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| T |
19493566 |
gagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatt |
19493625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 19495523 - 19495636
Alignment:
| Q |
162 |
ggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacattaccgtctctgtcgataatccaacacagtattcccgtgtttatt |
261 |
Q |
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| T |
19495523 |
ggttcacttaactcactaaccattaactacaaccaattcaccattcagttcaacatttccgtgtcggtctataatcccacagacttttctcgtgtctatt |
19495622 |
T |
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| Q |
262 |
acgacgccgtctct |
275 |
Q |
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| T |
19495623 |
acgacgcagtctct |
19495636 |
T |
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