View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_high_2 (Length: 478)
Name: NF7961_high_2
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 11356001 - 11355541
Alignment:
| Q |
8 |
ttaatcgagaaagagggaatacagagaggagcaatataaagatgaactaccatattcgtttgcttccgaataaatttaacaatataaatagaggaatata |
107 |
Q |
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| T |
11356001 |
ttaatcaagaaagagggatga-agagaggagcaatataaagatgaactaccatatttgtttgcttctgaataaatttaacaatataaatagaggaatata |
11355903 |
T |
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| Q |
108 |
ttactatgctatttaattttgaattgaatcatcaactgaaataattttaccgatgaagttgtgagaaattctttgaatcatcaatcgattctgactttgg |
207 |
Q |
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| T |
11355902 |
ttactattctatttaattttgaattgaatcattaactgaaataatgttaccaatgaagttgagagaaattctttgaatcatcaaccgattctgactttgg |
11355803 |
T |
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| Q |
208 |
ttgtaggcgctacacgggatgttagggacattattgctaatccaggagatgttgacgtgatatttatgccgtatttatcatagtcnnnnnnntaaaattt |
307 |
Q |
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| T |
11355802 |
ttgtaggcgctacacgggatgttagggacattattgctaatccaggagatgttgatgtgatatttatgccgtatttatcatagtcagaaaaataaaattt |
11355703 |
T |
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| Q |
308 |
gaaaggcagcctatcaaacccgctctaagggtcctcctccctcctctcccaaatgaagattaattactggaatatcaagggtataggtaattcgaacttc |
407 |
Q |
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| T |
11355702 |
gaaaggcagcctatcaaacccgctctaagggtcctcctccctcctctccccaatgaagattaattactggaatatcaagggtataggtaattcgaacttc |
11355603 |
T |
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| Q |
408 |
cgagtttcccttggtgatttattcataaagtgaatttgtttgcaaccaatctatattattcg |
469 |
Q |
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| T |
11355602 |
cgagtttcccttggtgatttattcataaagtgaatttgtttgcaaccaatctatatttttcg |
11355541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 343 - 460
Target Start/End: Complemental strand, 11355206 - 11355088
Alignment:
| Q |
343 |
cctccctcctctccca-aatgaagattaattactggaatatcaagggtataggtaattcgaacttccgagtttcccttggtgatttattcataaagtgaa |
441 |
Q |
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| T |
11355206 |
cctcccttctctcccccaatgaagattaattactagaatattaggggtattggtaattcaaactcttgagtttccctcagtaatttattcataaagtgaa |
11355107 |
T |
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| Q |
442 |
tttgtttgcaaccaatcta |
460 |
Q |
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| T |
11355106 |
tttgtttgcaaccaatcta |
11355088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 11355293 - 11355212
Alignment:
| Q |
8 |
ttaatcgagaaagagggaatacagagaggagcaatataaagatgaactaccatattcgtttgcttccgaataaatttaacaa |
89 |
Q |
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| T |
11355293 |
ttaatcaataaagagggaatacatagaggagcaatataaagatgaaataccatattcgcttgcttacgaataaatttaacaa |
11355212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 418
Target Start/End: Complemental strand, 17795222 - 17795118
Alignment:
| Q |
314 |
cagcctatcaaacccgctctaagggtcctcctccctcctctcccaaatgaagattaattactggaatatcaagggtataggtaattcgaacttccgagtt |
413 |
Q |
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|||| |||||||||| |||||||||| || |||||||| |||| ||||||||||| || || |||||||| |||||||||||||||| ||| |||||| |
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| T |
17795222 |
cagcttatcaaacccactctaagggtgttcttccctcctttccctaatgaagattattttctagaatatcatgggtataggtaattcggactctcgagtt |
17795123 |
T |
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| Q |
414 |
tccct |
418 |
Q |
| |
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||||| |
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| T |
17795122 |
tccct |
17795118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 418
Target Start/End: Complemental strand, 19103662 - 19103558
Alignment:
| Q |
314 |
cagcctatcaaacccgctctaagggtcctcctccctcctctcccaaatgaagattaattactggaatatcaagggtataggtaattcgaacttccgagtt |
413 |
Q |
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| T |
19103662 |
cagcttatcaaacccactctaagggtgttcttccctcctttccctaatgaagattattttctagaatatcatgggtataggtaattcggactctcgagtt |
19103563 |
T |
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| Q |
414 |
tccct |
418 |
Q |
| |
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||||| |
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| T |
19103562 |
tccct |
19103558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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