View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7961_high_5 (Length: 370)

Name: NF7961_high_5
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7961_high_5
NF7961_high_5
[»] chr2 (18 HSPs)
chr2 (13-356)||(8417544-8417884)
chr2 (14-347)||(8439435-8439765)
chr2 (14-356)||(8375338-8375677)
chr2 (187-356)||(8431357-8431526)
chr2 (210-356)||(8412329-8412475)
chr2 (210-356)||(8434427-8434573)
chr2 (210-325)||(8406240-8406355)
chr2 (210-325)||(8395217-8395332)
chr2 (15-154)||(8394788-8394924)
chr2 (15-154)||(8406405-8406541)
chr2 (15-154)||(8412525-8412661)
chr2 (15-154)||(8434623-8434759)
chr2 (15-148)||(8395031-8395161)
chr2 (179-313)||(41119234-41119370)
chr2 (247-313)||(8368638-8368704)
chr2 (247-313)||(8400706-8400772)
chr2 (247-313)||(8422283-8422349)
chr2 (76-154)||(8431553-8431631)
[»] chr4 (1 HSPs)
chr4 (214-319)||(55336620-55336725)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 8417884 - 8417544
Alignment:
Q  13 aatatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||    
T  8417884 aatatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatt---tgtgaactacgtaacaattggaacactcttctcttgaattccat 8417788  T
Q  113 caacatgattattctcactgctacaaccatgtctggtcttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttct 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| | |  |||||||||| |||||||||||||||||||||||||||||||||    
T  8417787 caacatgattactctcactgctacaaccatgtctggtcttgctgctactgttcccactacttgctcagattcatcacttttggctttgaagttatcttct 8417688  T
Q  213 gctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  8417687 gctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggagcaatgaaacactacaagattgttca 8417588  T
Q  313 agcaacttcaaagtcaaatccaaacaaaaattgctgttgaaaat 356  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  8417587 agcaacttcaaagtcaaatccaaacaaaaattgctcttggaaat 8417544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 8439765 - 8439435
Alignment:
Q  14 atatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatc 113  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||| ||||||    | ||||| |||| |||||||||||||||||||||||| ||||||    
T  8439765 atatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattg---gcgaacagcgtagcaattggaacactcttctcttgaactccatc 8439669  T
Q  114 aacatgattattctcactgctacaaccatgtctggtcttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttctg 213  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8439668 aacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttctg 8439569  T
Q  214 ctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||    
T  8439568 ctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa 8439469  T
Q  314 gcaacttcaaagtcaaatccaaacaaaaattgct 347  Q
    |||||||||||||||||||||||| |||||||||    
T  8439468 gcaacttcaaagtcaaatccaaactaaaattgct 8439435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 8375338 - 8375677
Alignment:
Q  14 atatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatc 113  Q
    ||||||| |||||||||  |||||||| ||| ||||||||||||| ||||||    | ||||| ||||||||||||||||||||||||||||| ||||||    
T  8375338 atatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattg---gcgaacagcgtaacaattggaacactcttctcttgaactccatc 8375434  T
Q  114 aacatgattattctcactgctacaaccatgtctggtcttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttctg 213  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8375435 aacatgattactcttactgctacaaccatgtctggtgttgctgctactgctgcagctacttgctctgattcatcacttttggctttgaagttatcttctg 8375534  T
Q  214 ctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||    
T  8375535 ctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa 8375634  T
Q  314 gcaacttcaaagtcaaatccaaacaaaaattgctgttgaaaat 356  Q
    ||||||||||||||| ||| |||| | ||||||| ||| ||||    
T  8375635 gcaacttcaaagtcatatcaaaactacaattgctattggaaat 8375677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 8431526 - 8431357
Alignment:
Q  187 cacttttggctttgaagttatcttctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagagga 286  Q
    ||||||||||| ||||  |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |  |||| ||    
T  8431526 cacttttggctctgaaactatcttctgctctcctgttttcggcagccaacggattgttgcttatcatgaacaaaatccaaccctctcaactcacagaaga 8431427  T
Q  287 gcaacgaaacgctacaagattgttcaagcaacttcaaagtcaaatccaaacaaaaattgctgttgaaaat 356  Q
     ||| | || || ||||||||||||||| |||||||||| ||||| ||||| | ||||||| ||| ||||    
T  8431426 acaaaggaatgccacaagattgttcaagtaacttcaaaggcaaattcaaactacaattgctcttggaaat 8431357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 8412475 - 8412329
Alignment:
Q  210 tctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgt 309  Q
    ||||||||||| || ||||| ||||| ||||| ||| |||||||||||||||||||||| |||||| |  ||||||| ||| |||| |||||||||||||    
T  8412475 tctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt 8412376  T
Q  310 tcaagcaacttcaaagtcaaatccaaacaaaaattgctgttgaaaat 356  Q
    ||||||||||||||||||| ||| |||| | ||||||| ||| ||||    
T  8412375 tcaagcaacttcaaagtcatatcaaaactacaattgctattggaaat 8412329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 8434573 - 8434427
Alignment:
Q  210 tctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgt 309  Q
    ||||||||||| || ||||| ||||| ||||| ||| |||||||||||||||||||||| |||||| |  ||||||| ||| |||| |||||||||||||    
T  8434573 tctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt 8434474  T
Q  310 tcaagcaacttcaaagtcaaatccaaacaaaaattgctgttgaaaat 356  Q
    ||||||||||||||||||| ||| |||| | ||||||| ||| ||||    
T  8434473 tcaagcaacttcaaagtcatatcaaaactacaattgctattggaaat 8434427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 8406355 - 8406240
Alignment:
Q  210 tctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgt 309  Q
    ||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| |  ||||||| ||| |||| |||||||||||||    
T  8406355 tctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt 8406256  T
Q  310 tcaagcaacttcaaag 325  Q
    |||| |||||||||||    
T  8406255 tcaaacaacttcaaag 8406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 8395217 - 8395332
Alignment:
Q  210 tctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgt 309  Q
    ||||||||||| || ||||| ||||| ||||| ||| |||||||||||||||||||||| |||||| |  ||||||| ||| |||| |||||||||||||    
T  8395217 tctgctcttttattctctgctgccactggattattgattatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt 8395316  T
Q  310 tcaagcaacttcaaag 325  Q
    |||| |||||||||||    
T  8395317 tcaaacaacttcaaag 8395332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 8394788 - 8394924
Alignment:
Q  15 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 114  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8394788 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8394884  T
Q  115 acatgattattctcactgctacaaccatgtctggtcttgc 154  Q
    | ||||||| ||||||||||||||||||||||||| ||||    
T  8394885 atatgattactctcactgctacaaccatgtctggtgttgc 8394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 8406541 - 8406405
Alignment:
Q  15 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 114  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8406541 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8406445  T
Q  115 acatgattattctcactgctacaaccatgtctggtcttgc 154  Q
    | ||||||| ||||||||||||||||||||||||| ||||    
T  8406444 atatgattactctcactgctacaaccatgtctggtgttgc 8406405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 8412661 - 8412525
Alignment:
Q  15 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 114  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8412661 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8412565  T
Q  115 acatgattattctcactgctacaaccatgtctggtcttgc 154  Q
    | ||||||| ||||||||||||||||||||||||| ||||    
T  8412564 atatgattactctcactgctacaaccatgtctggtgttgc 8412525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 8434759 - 8434623
Alignment:
Q  15 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 114  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8434759 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8434663  T
Q  115 acatgattattctcactgctacaaccatgtctggtcttgc 154  Q
    | ||||||| ||||||||||||||||||||||||| ||||    
T  8434662 atatgattactctcactgctacaaccatgtctggtgttgc 8434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 8395031 - 8395161
Alignment:
Q  15 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacattatttgtgaacaacgtaacaattggaacactcttctcttgaattccatca 114  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||    | |||||||||||||| ||||| | |||||| || || || || |    
T  8395031 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattg---gcgaacaacgtaacaactggaataatcttctattaaactcaataa 8395127  T
Q  115 acatgattattctcactgctacaaccatgtctgg 148  Q
    | ||||||| ||||||||||||||||||||||||    
T  8395128 aaatgattactctcactgctacaaccatgtctgg 8395161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 313
Target Start/End: Complemental strand, 41119370 - 41119234
Alignment:
Q  179 tgattcatcacttttggctttgaagttatcttctgctcttttgttttctg--cagccaccggattgttgcttatcatgaacaaaatccaaccttctcaat 276  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||||||   ||||||  |||| || |||||||||||||||  |||||| ||||||     
T  41119370 tgattcatcacttttggctttgaagttgtcttatgctctttggttttctgtagagccacatgattttttcttatcatgaacaaaccccaaccctctcaac 41119271  T
Q  277 tggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    |  ||||||| ||| | || ||||||||| |||||||    
T  41119270 tcacagaggaacaaaggaatgctacaagaatgttcaa 41119234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 8368704 - 8368638
Alignment:
Q  247 ttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||||||||||||||||||||||| ||| | || ||||||||| |||| || ||||||||||||||    
T  8368704 ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa 8368638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 8400706 - 8400772
Alignment:
Q  247 ttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||||||||||||||||||||||| ||| | || ||||||||| |||| || ||||||||||||||    
T  8400706 ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa 8400772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 8422283 - 8422349
Alignment:
Q  247 ttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||||||||||||||||||||||| ||| | || ||||||||| |||| || ||||||||||||||    
T  8422283 ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa 8422349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 8431631 - 8431553
Alignment:
Q  76 aacgtaacaattggaacactcttctcttgaattccatcaacatgattattctcactgctacaaccatgtctggtcttgc 154  Q
    |||||||||| ||||| | |||||| ||||| || || |||||||||| |||||||||||  || ||||||||| ||||    
T  8431631 aacgtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtgttgc 8431553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 55336725 - 55336620
Alignment:
Q  214 ctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggcagaggagcaacgaaacgctacaagattgttcaa 313  Q
    ||||| ||||||| ||||| || ||  ||||||||||||||||||| || || ||||| ||  | || ||||| || || || |||||||||||||||||    
T  55336725 ctcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcaatgctacaagattgttcaa 55336626  T
Q  314 gcaact 319  Q
     |||||    
T  55336625 acaact 55336620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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