View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_10 (Length: 359)
Name: NF7961_low_10
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 31958246 - 31957914
Alignment:
| Q |
16 |
atatgcaatgaaaaagtaatatcttgtattgaaatataaatggcgacaattggagtaaattaagtgacggaaattggaaaaggtaaaa-ctactagcacc |
114 |
Q |
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| T |
31958246 |
atatgcaatgaaaaagtaataccttgtattgaaatataaatggcgacaattggagtaaattaagtgacggaaattggaaaaggtaaaaactactagcacc |
31958147 |
T |
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| Q |
115 |
acctttatctcaatgaaacagattaacacggaagaaattagcacaaggcaacaacaaaaatgtataggggag--tagatttctcactgaaggacggaaaa |
212 |
Q |
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| T |
31958146 |
acctttatctcaatgaaacagattaacacggaagaaattagcacaaggcagcaacaaaaatgtataggggagagtagatttctcaccgaaggatggaaaa |
31958047 |
T |
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| Q |
213 |
atccctcacaaggggagcggtggcgctaaccctaagaatggtagcaaaaatcatgacagagactaccaacttgtcctcctatttcccatctttatatacc |
312 |
Q |
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| T |
31958046 |
atccctcacaaggggagcagtggcgctaaccctaagaatggcagcaaaaatcatgacagagactaccaacttgtcctcctatttcccatctttatatacc |
31957947 |
T |
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| Q |
313 |
t-gtcggtggaatttaattt--aagttgaaagt |
342 |
Q |
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| T |
31957946 |
tggtcggtggaatttaatttggaagttgaaagt |
31957914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 31959626 - 31959789
Alignment:
| Q |
116 |
cctttatctcaatgaaacagattaacacggaagaaattagcacaaggcaacaacaaaaatgtataggggagtagatttctcactgaaggacggaaaaatc |
215 |
Q |
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| T |
31959626 |
cctttatctctataacacggaatatcacgtaagaaattagcacaagccaatggcaaaaacgtacacgggagtagatttctcaccaacagaaggcaaaatc |
31959725 |
T |
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| Q |
216 |
cctcacaaggggagcggtggcgctaaccctaagaatggtagcaaaaatcatgacagagactacc |
279 |
Q |
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| T |
31959726 |
cctcacaaggagagtggcggcgctaaccctaggagcggcggcaagaatcatgacggagactacc |
31959789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 30042851 - 30042940
Alignment:
| Q |
157 |
acaaggcaacaacaaaaatgtataggggagtagatttctcactgaaggacggaaaaatccctcacaaggggagcggtggcgctaacccta |
246 |
Q |
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| T |
30042851 |
acaacgcaacaacaaacacgttcaggggagactatttctcatcgaacgacggcaaaatccttcacaaagggagcggcggcgctaacccta |
30042940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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