View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7961_low_11 (Length: 345)

Name: NF7961_low_11
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7961_low_11
NF7961_low_11
[»] chr2 (13 HSPs)
chr2 (63-329)||(35343436-35343702)
chr2 (63-315)||(35348141-35348393)
chr2 (71-324)||(35355589-35355842)
chr2 (76-309)||(35345987-35346220)
chr2 (63-290)||(35371478-35371708)
chr2 (15-66)||(35343750-35343801)
chr2 (88-290)||(35374296-35374492)
chr2 (86-238)||(35364256-35364408)
chr2 (71-250)||(35368116-35368295)
chr2 (71-150)||(35340577-35340657)
chr2 (75-149)||(35351004-35351078)
chr2 (275-317)||(35351228-35351270)
chr2 (71-144)||(35335492-35335565)
[»] chr4 (3 HSPs)
chr4 (109-158)||(9063694-9063743)
chr4 (109-181)||(9072737-9072809)
chr4 (109-149)||(9060407-9060447)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 63 - 329
Target Start/End: Complemental strand, 35343702 - 35343436
Alignment:
Q  63 aactagaagactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtct 162  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35343702 aactagaagactaatgtaagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtct 35343603  T
Q  163 cgatctccattgtgataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaa 262  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35343602 cgatctccattgtgataattttcttcaatgcaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaa 35343503  T
Q  263 taatggccaaataaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgttaaaaa 329  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35343502 taatggccaaagaaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaa 35343436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 63 - 315
Target Start/End: Complemental strand, 35348393 - 35348141
Alignment:
Q  63 aactagaagactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtct 162  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35348393 aactagaagactaatgtaagttaacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttccttgcatgagtct 35348294  T
Q  163 cgatctccattgtgataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaa 262  Q
    |||||||||||| ||| || ||||| |||  ||||||||| |||||||| || ||||||||||||||||||||  |||||||| |||| ||||||||||     
T  35348293 cgatctccattgcgattatcttctttaatgcaagatacacttgtataaccaaaccaatcaccgttaccttcactgtatccatgatgcttgcactttggag 35348194  T
Q  263 taatggccaaataaatggatgccattttggtttttacgctgtctatgtgaaaa 315  Q
    |||| |||||| |||||||||||||||| |||||||||||| |||||| ||||    
T  35348193 taatagccaaagaaatggatgccatttttgtttttacgctggctatgttaaaa 35348141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 71 - 324
Target Start/End: Original strand, 35355589 - 35355842
Alignment:
Q  71 gactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctcc 170  Q
    |||| |||| |||||||||||||| ||||||||| || ||||||||||| |||||||| |||||||||||||| |||||  || | ||||||||||||||    
T  35355589 gacttatgtaagttaacacattagagttttaggcagcaggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctcc 35355688  T
Q  171 attgtgataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggcc 270  Q
    |||| |||||| |||||||||  |||||||| ||||||||| || ||||||||| ||||||||| |||||||||||| || |||||||||| ||||||||    
T  35355689 attgcgataatcttcttcaatgcaagatacatatgtataaccaaaccaatcaccattaccttcatcatatccatgctccttgcactttggagtaatggcc 35355788  T
Q  271 aaataaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgtt 324  Q
    | | |||| ||||||||||||||||| |||||  |||||| |||||||||||||    
T  35355789 atagaaattgatgccattttggttttgacgcttgctatgtaaaaagtgtatgtt 35355842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 35345987 - 35346220
Alignment:
Q  76 atgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctccattgt 175  Q
    |||| |||||||||||||| |||||| || || ||||||||||| ||||||||||||||||||||||| ||||| ||| | || ||| |||| ||||||     
T  35345987 atgtaagttaacacattagagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgc 35346086  T
Q  176 gataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggccaaata 275  Q
    |||||| |||| ||||  |||||||| ||||||||| || |||||||||||| ||||||||| || ||| ||||| ||||  ||||  |||| ||    |    
T  35346087 gataatcttctacaatacaagatacagatgtataaccaaaccaatcaccgttgccttcaccacatgcattctgcttgcacaatggagcaatgaccgtgaa 35346186  T
Q  276 aatggatgccattttggtttttacgctgtctatg 309  Q
    ||||||||||||||| ||||| | |||| |||||    
T  35346187 aatggatgccattttagttttgaagctggctatg 35346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 35371478 - 35371708
Alignment:
Q  63 aactagaagactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatca---------ccttctttg 153  Q
    ||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||| |||||||| || ||||| || |||         ||||| |||    
T  35371478 aactagaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttg 35371577  T
Q  154 catgagtctcgatctccattgtgataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgc 253  Q
    ||||||||||||||||||||| | |||| |||||||||  ||||||||| |||||||  || ||||      ||||||||||||||| |||| |||| ||    
T  35371578 catgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatacatgttgcttgc 35371671  T
Q  254 actttggaataatggccaaataaatggatgccatttt 290  Q
    ||||| ||  |||| |||   ||||||||||||||||    
T  35371672 actttagagcaatgaccatcaaaatggatgccatttt 35371708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 35343801 - 35343750
Alignment:
Q  15 gacatcaaacctatttataggcactaaacttgttaagttctaatttcgaact 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35343801 gacatcaaacctatttataggcactaaacttgttaagttctaatttcgaact 35343750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 290
Target Start/End: Original strand, 35374296 - 35374492
Alignment:
Q  88 acattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctccattgtgataattttctt 187  Q
    ||||||| |||||| || || ||||||||||| |||||||| |||||||||||||||||||| | | | || ||||| ||||| || ||||||| |||||    
T  35374296 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt 35374395  T
Q  188 caattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggccaaataaatggatgccat 287  Q
    ||||  ||||||||| |||||||  || ||||      ||||||||||||||| |||| |||| ||| ||| ||  |||| |||   |||||||||||||    
T  35374396 caatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccat 35374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 35364256 - 35364408
Alignment:
Q  86 acacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctccattgtgataattttc 185  Q
    ||||||||| |||||| || || ||||||||||| |||||||| |||||||| ||||| |||||  || || | | |||||| || |||  ||||| |||    
T  35364256 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttc 35364355  T
Q  186 ttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccat 238  Q
    ||||||  |||||||||| |||||||  | ||||||||||| |||||||||||    
T  35364356 ttcaatgcaagatacacacgtataaccgaaccaatcaccgtcaccttcaccat 35364408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 35368116 - 35368295
Alignment:
Q  71 gactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctcc 170  Q
    ||||||||| |||||||||||||| |||||| || || ||||||||||| |||||||| |||||||| ||||| |||||     | || ||  ||||       
T  35368116 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatcatgatccgt 35368215  T
Q  171 attgtgataattttcttcaattaaagatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgct 250  Q
     || ||||||| |||||||||  |||||||| ||||| ||| || ||||||| | | ||||||||||||| |||||||||    
T  35368216 gttatgataatcttcttcaatacaagatacagatgtacaaccaaaccaatcaacttcaccttcaccatatgcatgctgct 35368295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 35340577 - 35340657
Alignment:
Q  71 gactaatgtgagttaacacattagtgtttt-aggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttct 150  Q
    ||||||| | |||| ||||||||| ||||| | || |||||||||||||| ||||||||||| ||||||||||||||||||    
T  35340577 gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatcatcaccttct 35340657  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 35351004 - 35351078
Alignment:
Q  75 aatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcaccttc 149  Q
    ||||| ||||| |||||||| || ||| || || ||||| ||||| |||||||||||||||||||||||||||||    
T  35351004 aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatcatcaccttc 35351078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 35351228 - 35351270
Alignment:
Q  275 aaatggatgccattttggtttttacgctgtctatgtgaaaagt 317  Q
    |||||||||||||||||||||| ||||||  ||||||||||||    
T  35351228 aaatggatgccattttggttttgacgctgattatgtgaaaagt 35351270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 35335492 - 35335565
Alignment:
Q  71 gactaatgtgagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatca 144  Q
    ||||||||| ||||||||||||| |  |||| || || ||||||||||| |||||||| || || |||||||||    
T  35335492 gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtcgtcatcatcatca 35335565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 9063743 - 9063694
Alignment:
Q  109 ggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatga 158  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  9063743 ggagcatagtcataaccaccatcatcgtcatcatcaccttccttgtatga 9063694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 9072809 - 9072737
Alignment:
Q  109 ggagcatagtcgtaaccaccatcatcgtcatcatcaccttctttgcatgagtctcgatctccattgtgataat 181  Q
    ||||||||||| || |||||||||||||||||||||||||| ||| |||| ||   ||||||| |||||||||    
T  9072809 ggagcatagtcatagccaccatcatcgtcatcatcaccttccttgtatgaatccacatctccaatgtgataat 9072737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 9060447 - 9060407
Alignment:
Q  109 ggagcatagtcgtaaccaccatcatcgtcatcatcaccttc 149  Q
    |||||||| || || ||||||||||||||||||||||||||    
T  9060447 ggagcataatcatatccaccatcatcgtcatcatcaccttc 9060407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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