View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_13 (Length: 337)
Name: NF7961_low_13
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 188 - 321
Target Start/End: Complemental strand, 19371171 - 19371038
Alignment:
| Q |
188 |
gtttattcaaaagatttaattttgaaaaatgaactcaataaaagaacaaagcattctctggtaggcattacggaagcaaacactagaatgatagattgag |
287 |
Q |
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| T |
19371171 |
gtttattcgaaagatttaattttgaaaaatgaattcaataaatgaacaaagcattctctgctaggcattatggaagcaaacactagaatgatagattgag |
19371072 |
T |
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| Q |
288 |
atttatcatttaagtgaagcaaaagcagtacact |
321 |
Q |
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| T |
19371071 |
atttatcatttaagtgaagcaaaagctgtacact |
19371038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 42198493 - 42198655
Alignment:
| Q |
22 |
gtgtaaccgtctaactgtattatctggcatctgccagtcatctaggagttgctgactaacacgtgtcatccagctagaggcagttagctta----tataa |
117 |
Q |
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| T |
42198493 |
gtgtaactgtctaactgtattaactggcaactgccaatcatctaggagttgctgactgacgcttgtcagtcagctagaggcagttagtttatgtctataa |
42198592 |
T |
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| Q |
118 |
atagactattcaacctcatgtaacta--accgagagatcattctaacagaattcacaaaaaca |
178 |
Q |
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| T |
42198593 |
atagacttttcaacctaatgtaattaagactaagaaatcaatctaacagaattcacaaaaaca |
42198655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 19371720 - 19371661
Alignment:
| Q |
114 |
ataaatagactattcaacctcatgtaactaaccgagagatcattctaacagaattcacaa |
173 |
Q |
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| T |
19371720 |
ataaatagactcttcaacctcatgtaactaactaagaaatcatgctaacagaactcacaa |
19371661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 21199986 - 21200177
Alignment:
| Q |
6 |
ctagattattctccctgtgtaaccgtctaactgtattatctggcatctgccagtcatctaggagttgctgactaacacgtgtcatccagctagaggcagt |
105 |
Q |
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| T |
21199986 |
ctagattactctccgtgtgtaactgtctaactgtgttatctggcaactgccaatcatctaggaggtgccgaatgacgcttgtcagtcagctagaggcagt |
21200085 |
T |
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| Q |
106 |
tagctta----tataaatagac---tattcaacctcatgtaacta------accgagagatcattctaacagaattcacaaaaacagttata |
184 |
Q |
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| T |
21200086 |
tagtttatgtctataaatagactttttttcaacctcatgtaactaactaagactaagaaatcaatctaacagaattcacaaaaacagttata |
21200177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 11521660 - 11521733
Alignment:
| Q |
114 |
ataaatagactattcaacctcatgtaactaaccgagagatcattctaacagaattcacaaaaacagttataacag |
188 |
Q |
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| T |
11521660 |
ataaatacactcatcaacctcatgtaactgattgagaaatcattctaacagaattca-gaaaacagttacaacag |
11521733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 11521563 - 11521620
Alignment:
| Q |
10 |
attattctccctgtgtaaccgtctaactgtattatctggcatctgccagtcatctagg |
67 |
Q |
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| T |
11521563 |
attactctccctgtgtaactgtccaactgtattaactagcaactgccagtcacctagg |
11521620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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