View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_19 (Length: 255)
Name: NF7961_low_19
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 34501857 - 34501631
Alignment:
| Q |
15 |
aattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
114 |
Q |
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| T |
34501857 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
34501758 |
T |
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| Q |
115 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctgtaccatacgctcattgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501757 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctgtaccatacgctcattgct |
34501658 |
T |
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| Q |
215 |
ggatattgcaggctacagaaatttgat |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34501657 |
ggatattgcaggctacagaaatttgat |
34501631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 44460827 - 44461065
Alignment:
| Q |
15 |
aattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
44460827 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
44460926 |
T |
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| Q |
115 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgctgtaccata |
203 |
Q |
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| T |
44460927 |
tttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
44461026 |
T |
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| Q |
204 |
cgctcattgctggatattgcaggctacagaaatttgatg |
242 |
Q |
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| T |
44461027 |
cactcattgttggatattgcaagctagagaaatttgatg |
44461065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 44468360 - 44468598
Alignment:
| Q |
15 |
aattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
44468360 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
44468459 |
T |
|
| Q |
115 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgctgtaccata |
203 |
Q |
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| T |
44468460 |
tttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
44468559 |
T |
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| Q |
204 |
cgctcattgctggatattgcaggctacagaaatttgatg |
242 |
Q |
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| T |
44468560 |
cactcattgttggatattgcaagctagagaaatttgatg |
44468598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 46359626 - 46359864
Alignment:
| Q |
15 |
aattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
114 |
Q |
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||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
46359626 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
46359725 |
T |
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| Q |
115 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgctgtaccata |
203 |
Q |
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|||||||| ||||||||||| || || ||||| | |||||||||||||| || ||||||| ||||||||||| | |||||||||||| |
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| T |
46359726 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
46359825 |
T |
|
| Q |
204 |
cgctcattgctggatattgcaggctacagaaatttgatg |
242 |
Q |
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| T |
46359826 |
cactcattgttggatattgcaagctagagaaatttgatg |
46359864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 41583985 - 41584037
Alignment:
| Q |
190 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
242 |
Q |
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| T |
41583985 |
tctgctgtaccatacgctcattgatggatattgcaggctacagaaatttgatg |
41584037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 38604572 - 38604490
Alignment:
| Q |
15 |
aattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtataca |
97 |
Q |
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|||||||| |||| |||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
38604572 |
aattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttataca |
38604490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 40180053 - 40179993
Alignment:
| Q |
26 |
cctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtat |
86 |
Q |
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|||||||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40180053 |
cctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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