View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_2 (Length: 760)
Name: NF7961_low_2
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 158 - 760
Target Start/End: Original strand, 24313157 - 24313759
Alignment:
| Q |
158 |
taacttcacacgtatcataataataaattaattgttgaattatttatttatttttacacgaatgactatttaacatgttgcatgtattacagattcaaag |
257 |
Q |
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| T |
24313157 |
taacttcacacgaatcatagtaattaattaattgttgaattatttatttatttttacacgaatgactatttaacatattgcatgtattacagattcaaag |
24313256 |
T |
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| Q |
258 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctaccccttttcaatttgaaaaatcaacatgattttctacaaagcatagctaaaa |
357 |
Q |
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| T |
24313257 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctacccctttttaatttgacaaatcaatatgattttttacaaagcataggtaaaa |
24313356 |
T |
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| Q |
358 |
cactttcaataacacctttgggtgttatattcaacaccgtggaaagcttagaagattcatcactaaatcaactccaaaagctatacaaagttaacctctt |
457 |
Q |
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| T |
24313357 |
cactttcaataacacctttgggtgttatattcaacaccgtggaaagcttagaagattcatcactaaatcaactccaaaagctatacaaagctaacctctt |
24313456 |
T |
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| Q |
458 |
ccccataggtcctctacacatgattgccaatgatgccagcaatactaatagcattctgcaagaaaatgataattgcatatcttggctaa---acaacaaa |
554 |
Q |
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| T |
24313457 |
ccccataggtcctctacacatgattgccaatgatgctaacaa---tagtagcattctgcaagaaaatgataattgcatatcttggctaaattacaacaaa |
24313553 |
T |
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| Q |
555 |
gcaagaaaatctgtgttatatgtaagtttgggaagcatagctagttgggaagaaaaagagctaactgaagttgcttgtggcttagtcaacagcagacaaa |
654 |
Q |
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| T |
24313554 |
ccaagaaagtctgtgttatatgtaagtttgggaagcatagctagttgggaagagaaagagctaactgaagttgcttgtggcttagtcaacagcagacaaa |
24313653 |
T |
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| Q |
655 |
atttcctttgggttattcgacccgagtcaatcaacgatgtttcagcatggttagaatctttgccggaagatgttaaagtaggtgtagcagagagaggctg |
754 |
Q |
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| T |
24313654 |
atttcctttgggttattcgacctgagtcaatcagcgatgtttcagcgtggttagaatccttgccggaagatgttaaagtaggtgtggcagagagaggctg |
24313753 |
T |
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| Q |
755 |
tgttgt |
760 |
Q |
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| T |
24313754 |
tgttgt |
24313759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 24312939 - 24313028
Alignment:
| Q |
63 |
cctcccgaaagattcctcatgtttaattagcttgaagtggcttttttctgttcacattcacgctcaagaaaatgatatcataaccataaa |
152 |
Q |
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| T |
24312939 |
cctcccgaaagattcctcatgtttaatgaccttgaagtagcttttttctgttcacattcacgctcaagaaaatgataccataaccataaa |
24313028 |
T |
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