View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_21 (Length: 252)
Name: NF7961_low_21
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 22917909 - 22918110
Alignment:
| Q |
43 |
ctgccgcccgggtgattgaaatagcat--gtgtaaatcatgagcaaacttt-aatagtaaaagtcaaacattaaacagaaagtgaataattcatcaaaat |
139 |
Q |
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||||||||||| | ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22917909 |
ctgccgcccggatcattgaaatagcatatgtgtaaatcataagcaaacttttaatagtaaaagtcaaacattaatcagaaagtgaataattcatcaaaat |
22918008 |
T |
|
| Q |
140 |
acaattgttacataaagaaacatttcatgataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagta |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22918009 |
acaattgttacataaagaaacatttcatgataaattgcggaagacttctttgtaaacaacatttaattgatgcaagccccttcatcgtctgttagaagta |
22918108 |
T |
|
| Q |
240 |
tt |
241 |
Q |
| |
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|| |
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|
| T |
22918109 |
tt |
22918110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 43787166 - 43787339
Alignment:
| Q |
68 |
atgtgtaaatcatgagcaaactttaatagtaaaagtcaaacattaaacagaaagtgaataattcatcaaaatacaattgttacataaagaaacatttcat |
167 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
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| T |
43787166 |
atgtgtaaaccaaaagcaaactttaatagtaaaagtcaaacattaaacagaaagtgaataattcatcaaaatacaattgttatataaaaaaacattttat |
43787265 |
T |
|
| Q |
168 |
gataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagtatt |
241 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43787266 |
gataaattacggaagacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctcttagaagtatt |
43787339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 36155699 - 36155634
Alignment:
| Q |
137 |
aatacaattgttacataaagaaacatttcatgataaattgcggaaaacttctttgtaaacaacatt |
202 |
Q |
| |
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|||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
36155699 |
aatacaattgggacataacaatacatttcataataaattgcggaaaacttctttgtaaacgacatt |
36155634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 2267334 - 2267376
Alignment:
| Q |
163 |
ttcatgataaattgcggaaaacttctttgtaaacaacatttga |
205 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2267334 |
ttcatgataaattgcggaaaacttctttgtaaacgacatttga |
2267376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 26533557 - 26533525
Alignment:
| Q |
173 |
attgcggaaaacttctttgtaaacaacatttga |
205 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
26533557 |
attgcggaaaatttctttgtaaacaacatttga |
26533525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 26533670 - 26533638
Alignment:
| Q |
173 |
attgcggaaaacttctttgtaaacaacatttga |
205 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
26533670 |
attgcggaaaatttctttgtaaacaacatttga |
26533638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 47742234 - 47742149
Alignment:
| Q |
163 |
ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtatt |
241 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||| | ||||||||| |
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| T |
47742234 |
ttcatgataaattgcgaaaaacttctttgtaaacgacatttgaagtacttttgatgcaagccccatcttcgtctatcagaagtatt |
47742149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 33868429 - 33868397
Alignment:
| Q |
173 |
attgcggaaaacttctttgtaaacaacatttga |
205 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
33868429 |
attgcggaaaatttctttgtaaacaacatttga |
33868397 |
T |
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