View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_25 (Length: 237)
Name: NF7961_low_25
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19964879 - 19965099
Alignment:
| Q |
1 |
cgacggtcccacccttatcgaagcttttgaccatttgaaactgcctgtgtctatgagggaaattcacaagcctctcaggataccaattcatggtttctac |
100 |
Q |
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| T |
19964879 |
cgacggtcccacccttatcgaagctcttgaccatttgaaactgcctgtgtctatgagggaaattcacaagcctctcaggatacgaattcatggtttctac |
19964978 |
T |
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| Q |
101 |
aaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactgagctgcaacgca |
200 |
Q |
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| T |
19964979 |
aaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtgatgaattttgccccaactgggctgcaacgca |
19965078 |
T |
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| Q |
201 |
aggtgaagtctgtgaagattg |
221 |
Q |
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| T |
19965079 |
aagtgaagtctgtgaagattg |
19965099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 4231323 - 4231231
Alignment:
| Q |
96 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactg |
188 |
Q |
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| T |
4231323 |
tctacaagattggaggaattggaactgttcctgtgggacgtgttgagactggtaccatgaaacctggaatggtggtgacttttgctccaactg |
4231231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 33860784 - 33860592
Alignment:
| Q |
5 |
ggtcccacccttatcgaagcttttgaccatttgaaactgcctgtgtctatgagggaaattcacaagcctctcaggataccaattcatggtttctacaagg |
104 |
Q |
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| T |
33860784 |
ggtcccacccttcttgaagctcttgaccgtatctaattgcctctgtctgcgaggctatttctcaatcctctccgaataccacttcatggtgtctacaaag |
33860685 |
T |
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| Q |
105 |
-ttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactgagctgcaa |
196 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||||||| |||||| |||||| |||| ||||| |||| ||||||||| ||||||| |
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| T |
33860684 |
attggaggaatcggaaatgtgcatgtaggacgtgttgtgactggtcacttgaaacctggaatggcggtgacttttgccccaactgggctgcaa |
33860592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 45984088 - 45984218
Alignment:
| Q |
66 |
acaagcctctcaggataccaattcatggtttctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggat |
165 |
Q |
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| T |
45984088 |
acaagcctctcagaataccacttcaggatgtctacaagattggaggaatcggaactgtgcctgtgggacgtgttgagactggttccttgaaccctggaat |
45984187 |
T |
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| Q |
166 |
ggtggtgaatttttccccaactgagctgcaa |
196 |
Q |
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|||| ||| |||| || |||||| ||||||| |
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| T |
45984188 |
ggtgctgacttttgccgcaactgggctgcaa |
45984218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 7891374 - 7891466
Alignment:
| Q |
96 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactg |
188 |
Q |
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|
|||||||| |||||||||| |||| ||||||||||||||| ||| | ||||| ||||| |||||| |||||| ||| |||| ||||||||| |
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| T |
7891374 |
tctacaagattggaggaattggaattgtgcctgtgggacgcgttgagtctggtatcttgaaacctggaatggtgctgacttttgccccaactg |
7891466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 50912237 - 50912149
Alignment:
| Q |
96 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttcccca |
184 |
Q |
| |
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|||||||| |||||| ||| |||| ||| |||||||||||||||| ||| ||| ||||| || ||| |||||||||| |||| ||||| |
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| T |
50912237 |
tctacaagattggagaaattggaattgtacctgtgggacgtattgagaccggtgtcttgaaacgtggaatggtggtgacttttgcccca |
50912149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 38138252 - 38138379
Alignment:
| Q |
66 |
acaagcctctcaggataccaattcatggtttctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggat |
165 |
Q |
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||||||||||| | ||||| |||| | | |||||||| |||||||||| |||| ||||||||||||||| ||| || ||| ||||| ||| || || |
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| T |
38138252 |
acaagcctctccgattaccacttcaggatgtctacaagattggaggaattggaactgtgcctgtgggacgggttgagagcggtgtcttgaaaccaggaat |
38138351 |
T |
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| Q |
166 |
ggtggtgaatttttccccaactgagctg |
193 |
Q |
| |
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|| ||||| |||| ||||||||| |||| |
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| T |
38138352 |
ggcggtgacttttgccccaactgggctg |
38138379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 1846347 - 1846255
Alignment:
| Q |
96 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactg |
188 |
Q |
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|||||||| |||||||||| |||| ||||||||||||||| ||| | ||||| ||||| |||||| |||||| ||| |||| ||||||||| |
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| T |
1846347 |
tctacaagattggaggaattggaattgtgcctgtgggacgcgttgagtctggtatcttgaaacctggaatggtgctgacttttgccccaactg |
1846255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 4619547 - 4619447
Alignment:
| Q |
96 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactgagctgca |
195 |
Q |
| |
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|||||||| |||||||||| |||| ||||||||||||| || ||| ||| ||| ||||| |||||| ||| |||||| |||| |||| | || |||||| |
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| T |
4619547 |
tctacaagattggaggaattggaactgtgcctgtgggatgtgttgagaccggtgtcttgaaacctggaatgatggtgacttttgccccgattgggctgca |
4619448 |
T |
|
| Q |
196 |
a |
196 |
Q |
| |
|
| |
|
|
| T |
4619447 |
a |
4619447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 4787830 - 4787932
Alignment:
| Q |
94 |
tttctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtggtgaatttttccccaactgagctg |
193 |
Q |
| |
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|||||||||| |||||||||||||| |||| ||||||||||| | | |||||||| |||| ||||| ||| |||| |||| ||||||||| |||| |
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| T |
4787830 |
tttctacaagattggaggaatcggagttgtgtctgtgggacgtgtcgagactggttgcttgtgccctggaatgtctgtgacttttgccccaactgggctg |
4787929 |
T |
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| Q |
194 |
caa |
196 |
Q |
| |
|
||| |
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| T |
4787930 |
caa |
4787932 |
T |
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