View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_28 (Length: 205)
Name: NF7961_low_28
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 55124770 - 55124924
Alignment:
| Q |
1 |
tttctcataactcatcttcttgtttgatttgattcttctcacttgaatctcacattnnnnnnntcgatttgttatgagaaattttgaagtggtgggttcg |
100 |
Q |
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| T |
55124770 |
tttctcataactcatcttcttgtttaatttgattcttctcacttgaatctcatattaaaaaaatcaatttgttatgagaaattttgaagtgatggattcg |
55124869 |
T |
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| Q |
101 |
aaaggatttctcaaaaatatgctttatgtgatgatgaatattgtagttgtttcca |
155 |
Q |
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| T |
55124870 |
aaaggatttctcaaaaatatgctttatgtgatgatgaatattgtagttgtttcca |
55124924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6680098 - 6679938
Alignment:
| Q |
1 |
tttctcataactcatcttcttgtttgatttgattcttctcacttgaatctcacattnnnnnnn--tcgatttgttatgagaaattttgaagtggtgggtt |
98 |
Q |
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| T |
6680098 |
tttctcataactcatcttcttatttaatttgattcttttcacttgaatcttacattaaaaaaaaatagatttgttatgagaaattttgtagtgatgggtt |
6679999 |
T |
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| Q |
99 |
cgaaaggatttctcaaaaatatgctttatgtgatgatgaatattgtagttgtttccagaat |
159 |
Q |
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| T |
6679998 |
tgaaaggatttctcagaaatatgctttatgtgatgatgaatattgttgttgtttccagaat |
6679938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 9430256 - 9430099
Alignment:
| Q |
5 |
tcataactcatcttcttgtttgatttgattcttctcacttgaatctcacattnnnnnnntc---gatttgttatgagaaattttgaagtggtgggttcga |
101 |
Q |
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| T |
9430256 |
tcataacccatcttctaatttaatttgattcttctcacttgaatcccacattaaaaaaaaaaaagatttgttatgagaaattttggagtgatgggtttga |
9430157 |
T |
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| Q |
102 |
aaggatttctcaaaaatatgctttatgtgatgatgaatattgtagttgtttccagaat |
159 |
Q |
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| T |
9430156 |
aaggatttctcaagaatatgttttatgtgacgatgagtattgttgttgtttcgagaat |
9430099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 35770724 - 35770754
Alignment:
| Q |
23 |
tttgatttgattcttctcacttgaatctcac |
53 |
Q |
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| T |
35770724 |
tttgatttgattcttctcacttgaatctcac |
35770754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 38543829 - 38543774
Alignment:
| Q |
75 |
tgagaaattttgaagtggtgggttcgaaaggatttctcaaaaatatgctttatgtga |
131 |
Q |
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| T |
38543829 |
tgagaaattttgtagtgattggtttgaaaggattt-tcaagaatatgctttatgtga |
38543774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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