View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_3 (Length: 519)
Name: NF7961_low_3
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Complemental strand, 46967961 - 46967470
Alignment:
| Q |
10 |
attattcttacacatccgccaacgttgatagctcgcaatgctgggagcttcacagttggtaagacattcaacttataagtaacgcaagactataacagtt |
109 |
Q |
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| T |
46967961 |
attattcttacacatccgccaacgttgatagctcgcaatgctgggagcttcacagttggtaagacattcaacttataagtaacgcaagactataacagtt |
46967862 |
T |
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| Q |
110 |
aagcagctctatataactaaaatattcaacatgttcctaaacacctaaacaaacaaattcctgccaccatctttggtacaataaagaaaagccataaata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
46967861 |
aagcagctctatataactaaaatattcaacatgttcctaaacacctaaacaaacaaattcctgctactatctttggtacaataaagaaaagccataaata |
46967762 |
T |
|
| Q |
210 |
aatgaacatcgagacaaattaactagcagcagccgtttataaatacaactnnnnnnnccgttacacattaaagtgaacttggaatattgttaccttctaa |
309 |
Q |
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| T |
46967761 |
aatgaacatcgagacaaattaactagcagcagccgtttataaatacaactaaaaaaaccgttacacattaaagtgaacttggaatattgttaccttctaa |
46967662 |
T |
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| Q |
310 |
tacgatcgtcatggcacaggagatatatgaaattggaatgctgatcaccaaagtatagaataaaagcagctgaagcaagccaaagaaaattttcgagcag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46967661 |
tacgatcgtcatggcacaggagatatatgaaattggaatgctgatcaccaaagtatagaataaaagcagctgaagcaagccaaagaaaattttcgagcag |
46967562 |
T |
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| Q |
410 |
ctcaatccatgtctttttaggaggactcggaggcagaaaagcacgctgcctcgaacatgcatcgtcttccaagtcatcaccactactagcat |
501 |
Q |
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| T |
46967561 |
ctcaatccatgtctttttaggaggactcggaggcagaaaagcacgctgcctcgaacatgcatcgtcttccaagtcatcaccactactagcat |
46967470 |
T |
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