View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_5 (Length: 471)
Name: NF7961_low_5
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 471
Target Start/End: Complemental strand, 42186338 - 42185876
Alignment:
| Q |
5 |
tacacgtgagtgtaatgtaacagtattgaacttgatctttcatttagatcatatgataacttttgctgcttccttcttccccgacttcaagataaagaat |
104 |
Q |
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| T |
42186338 |
tacacatgagtgtaatgtaacagtattgaacttgatctttcatttagatca--------cttttgctgcttccttcttccccgacttcaagataaagaat |
42186247 |
T |
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| Q |
105 |
atcatgtgccaaaacattttgttaatgtgtcttgccaaggagacaagataatatttcacatgttctactatatatatgaaaatgattgatcctccagtat |
204 |
Q |
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| T |
42186246 |
atcatgtgccaaaagattttgttaatgtgtctttccaaggagacaagataatatttcacatgttctactatatatatgaaaatgattgatcctccagtat |
42186147 |
T |
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| Q |
205 |
acaatttgacataacatggacataactgaaaccccaccacctcacctcaccccaaccacacacacatgtttgatggctaggatttttgtcgttacagcaa |
304 |
Q |
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| T |
42186146 |
acaatttgacataacatggacataactgaaaccccaccacctcacctcaccccaaccacacacacatgtttgatggctaggatttttgtcgttacagcaa |
42186047 |
T |
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| Q |
305 |
aagctaagattgta----ctctactcacaaagtcacaatgcttcagacttcatacatgtttacttaatgcttattttatatattttaatagtacatcaaa |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186046 |
aagctaagattgtactctctctactcacaaagtcacaatgcttcagacttcatacatgtttacttaatgcttattttatatattttaatagtacatcaaa |
42185947 |
T |
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| Q |
401 |
atcagctaggttccaacaaagtacgacccatgttaattatttgcagaagtcactttccataaattagtgta |
471 |
Q |
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| T |
42185946 |
atcagctaggttccaacaaagtacgacccatgttaattatttgcagaagtcactttccataaattagtgta |
42185876 |
T |
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