View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7961_low_6 (Length: 438)
Name: NF7961_low_6
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 4057500 - 4057268
Alignment:
| Q |
8 |
tatctcacatgtttcaaatctcacttgaaaataatactcaaaaagaaattaaaccttaaaaatacaagtcaaattcatattaaagtcataattctataaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4057500 |
tatctcacatgtttcaaatctcacttgaaaataatactcaaaaagaaattaaaccttaaaaatataagtcaaatacatgttaaagtcataattctataaa |
4057401 |
T |
|
| Q |
108 |
ttttaatgtaaaaattactacgtatagatgcttaaccaata--ttaacacttgttagcattttcattattaaaaacatatatcggatctcacaaaaacta |
205 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4057400 |
ttttaatataaaaattactacgtataaatgcttaaccaatatcttaacaattgttagcattttccttattaaaaacatatattggatctcacaaaaacta |
4057301 |
T |
|
| Q |
206 |
acacatttttaaggcgaagcaccaattcttacc |
238 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
4057300 |
acacatttttaaggctaagcaccaattcttacc |
4057268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 412
Target Start/End: Complemental strand, 4057188 - 4057094
Alignment:
| Q |
318 |
cgctgcgtttaattggcgtcttcttcaatcatcgtcacgtttcttttcattcattattcacctttttagggnnnnnnncttcactctctctctgc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4057188 |
cgctgcgtttaattggcgtcttcttcaatcatcgtcacgtttcttttcattcattcttcacctttttagggtttttttcttcactctctctctgc |
4057094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 29045434 - 29045333
Alignment:
| Q |
46 |
caaaaagaaattaaaccttaaaaatacaagtcaaattcatattaaagtcataattctataaattttaatgtaaaaattactacgtatagatgcttaacca |
145 |
Q |
| |
|
||||||||||||| | ||||||||| || ||||| | | |||||||||||| | ||||| |||||||| |||||||||||| | |||||| |||| || |
|
|
| T |
29045434 |
caaaaagaaattatatattaaaaatataaatcaaacacttgttaaagtcataactatataatttttaatgcaaaaattactacttttagatggttaaaca |
29045335 |
T |
|
| Q |
146 |
at |
147 |
Q |
| |
|
|| |
|
|
| T |
29045334 |
at |
29045333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 39351107 - 39351045
Alignment:
| Q |
66 |
aaaatacaagtcaaattcatattaaagtcataattctataaattttaatgtaaaaattactac |
128 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| || || || |||||||||||||||||| |
|
|
| T |
39351107 |
aaaatacaagtcaaacacatctaaaagtcataattatacaatttctaatgtaaaaattactac |
39351045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 54260983 - 54260879
Alignment:
| Q |
46 |
caaaaagaaattaaaccttaaaaatacaagtcaaattcatattaaagtcataattctataaattttaatgtaaaaattactacgtatagatgcttaacca |
145 |
Q |
| |
|
||||||||||||| | || |||||| ||||||||| | | ||||| |||||| | |||| |||||||| |||||||||||| | |||||| |||| || |
|
|
| T |
54260983 |
caaaaagaaattatattttgaaaataaaagtcaaatacctgttaaactcataaatacataatttttaatgcaaaaattactacttttagatgattaaaca |
54260884 |
T |
|
| Q |
146 |
atatt |
150 |
Q |
| |
|
||||| |
|
|
| T |
54260883 |
atatt |
54260879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 29373211 - 29373147
Alignment:
| Q |
62 |
cttaaaaatacaagtcaaattcatattaaagtcataattctataaattttaatgtaaaaattacta |
127 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||| |
|
|
| T |
29373211 |
cttaaaaatacaagtcaaacgcatataaaagtcataattatat-attttcaatgtaaaagttacta |
29373147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 5892768 - 5892716
Alignment:
| Q |
46 |
caaaaagaaattaaaccttaaaaatacaagtcaaattcatattaaagtcataa |
98 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
5892768 |
caaaaagaaattatatcttaaaaatacaagtcaaacacttattaaagtcataa |
5892716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University