View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_7 (Length: 426)
Name: NF7961_low_7
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 41203509 - 41203103
Alignment:
| Q |
17 |
ccaaaaacttggaaacactttcggtggcttttgccggaagcagtgacttggggatgcagtgtgtacttgctggctgtccgaagctgaaaaaacttgagat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41203509 |
ccaaaaacttggaaacactttcggtggcttttgccggaagcagtgacttggggatgcagtgtgtacttgctggctgtccgaagctgaaaaaacttgagat |
41203410 |
T |
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| Q |
117 |
aagggactgtccattcggcgatgcagcgcttttgtctggtttggagaagtacgagtcaatgaggtcactttggatgtcggactgccaagtaactatgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41203409 |
aagggactgtccattcggcgatgcagcgcttttgtctggtttggagaagtacgagtcaatgaggtcactttggatgtcggactgccaagtaactatgaat |
41203310 |
T |
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| Q |
217 |
ggatgtagattgttagcaaaagaaaagccgaggttgaatgttgaagtaattaaggaagaaggaagcggtgatagtcaggctgaaaaagtttatgtttatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41203309 |
ggatgtagattgttagcaaaagaaaagccgaggttgaatgttgaagtaattaaggaagaaggaagcggtgatagtcaggctgaaaaagtttatgtttatc |
41203210 |
T |
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| Q |
317 |
gttctgttgccggcccaagaagggatgcccctccatttgttctcactctctgaaatgtcaactctagtcctacactttaaagctcaagaggtgatgtcca |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41203209 |
gttctgttgccggcccaagaagggatgcccctctatttgttctcactctctgaaatgtcaactctagtcctacactttaaagctcaagaggtaatgtctt |
41203110 |
T |
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| Q |
417 |
tctcatt |
423 |
Q |
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| T |
41203109 |
tctcatt |
41203103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 36146850 - 36147218
Alignment:
| Q |
19 |
aaaaacttggaaacactttcggtggcttttgccggaagcagtgacttggggatgcagtgtgtacttgctggctgtccgaagctgaaaaaacttgagataa |
118 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| | || ||||| |||||||| | |||||||||||||||| |||||||||||||| |
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| T |
36146850 |
aaaaacttggaaacactttcagtggcttttgctggaagcagtgattgggcaatgcaatgtgtactggttggctgtccgaagctgcgaaaacttgagataa |
36146949 |
T |
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| Q |
119 |
gggactgtccattcggcgatgcagcgcttttgtctggtttggagaagtacgagtcaatgaggtcactttggatgtcggactgccaagtaactatgaatgg |
218 |
Q |
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||||| ||||||||||| |||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
36146950 |
gggacagtccattcggcaatgccgcgcttttgtctggttttgacaagtatgagtcaatgaggtcactttggatgtcggactgcaaagtgacgatgaatgg |
36147049 |
T |
|
| Q |
219 |
atgtagattgttagcaaaagaaaagccgaggttgaatgttgaagtaattaaggaagaaggaagcggtgatagtcaggctgaaaaagtttatgtttatcgt |
318 |
Q |
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|||||||||||||||| |||||| ||| ||||||||||||||||| || ||||||||||| | | |||||||||||||| |||| |||||||||||||| |
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| T |
36147050 |
atgtagattgttagcacaagaaaggcctaggttgaatgttgaagtgatgcaggaagaaggaggtgatgatagtcaggctggaaaactttatgtttatcgt |
36147149 |
T |
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| Q |
319 |
tctgttgccggcccaagaagggatgcccctccatttgttctcactctctgaaatgtcaactctagtcct |
387 |
Q |
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|||||||| || |||||||||||||| |||||||||||||||||||||||||||| || ||| |||||| |
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| T |
36147150 |
tctgttgctggaccaagaagggatgcacctccatttgttctcactctctgaaatgccatctccagtcct |
36147218 |
T |
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