View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7961_low_9 (Length: 360)
Name: NF7961_low_9
Description: NF7961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7961_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 28856867 - 28856537
Alignment:
| Q |
12 |
tgagaagaatgatgatcctctgacgttagcgcaatttgtgaagaaggaataccattcatataaggaagataaaaagaatagtatcatgacatttgagcaa |
111 |
Q |
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| T |
28856867 |
tgagaagaatgatgatcctctgacgttagcgcaatttgtgaagaaggaataccattcatataaggaagataaaaagaatagtatcatgacatttgagcaa |
28856768 |
T |
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| Q |
112 |
tttgttaagacgagattcggttccattgtagcggagctcaagttatgtaagaaaaccttgtatacacacctaccaacatctttatttccatttgaggaga |
211 |
Q |
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| T |
28856767 |
tttgttaagatgagattcagttccattgtagcggagctcaagttatgtaagaaaaccttgtatacacacctaccaacatctttatttccatttgaggaga |
28856668 |
T |
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| Q |
212 |
tgaagaaaattcctatagctcttgatttgctaacatctcttgaaagctccatgtgtaaagccaagttgaaacaaactctcgacgatcatggagacggaga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28856667 |
tgaagaaaattcctatagctcttgatttgctaacatctcttgaaagctccatgtgtaaagccaagttgaaacaaactctcgacgatcatggagatggaga |
28856568 |
T |
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| Q |
312 |
aagcatttttgactgccttggaaggttaaac |
342 |
Q |
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| T |
28856567 |
aagcatttttgactgccttggaaggttaaac |
28856537 |
T |
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