View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_14 (Length: 393)
Name: NF7962_high_14
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 33163860 - 33163509
Alignment:
| Q |
16 |
agaacaatacaaagatgtgaacaattacataatgaaaacgacaagaaagaaaaagggaaaataaagagatgattgtgttttaccaatgggaacaaaaggg |
115 |
Q |
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| T |
33163860 |
agaacaatacaaagatgtgaacaaatacataatgaaaacgacaagaaagaaaaagggaaaataaagagatgattgtgttttaccaatgggaacaaaaggg |
33163761 |
T |
|
| Q |
116 |
ttcctaacgcgcttcttctcttcaagaaaatcttcgaaaccgggttcaggactacccattttgatggttatacccgaattgaagaagaacttgaaagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33163760 |
ttcctaacgcgcttcttctcttcaagaaaatcttcgaaaccgggttcaggactacccattttgatggttatacccgaattga---agaacttgaaagaaa |
33163664 |
T |
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| Q |
216 |
gaaggaaccgaacgagaatgtatcaaccgaatcaatcaatatattaatatatgaatcaaagagggtctcgcgctattccaaacaaacactgtctttactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
33163663 |
gaaggaaccgaacgagaatgtatcaaccgaatcaatcaat------atatatgaatcaaagagggtctcgcgctattccaaacaaacaccgtctttgctt |
33163570 |
T |
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| Q |
316 |
gttc-nnnnnnnnctttgaagaacaagtaaatttcttatgtctgtcttaaatacttgtttt |
375 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163569 |
gttctttttttttctttgaagaacaagtaaatttcttatgtctgtcttaaatacttgtttt |
33163509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 44037638 - 44037932
Alignment:
| Q |
16 |
agaacaatacaaagatgtgaacaattacataatgaaaacgacaagaaagaaaaagggaaaataaagagatgattgtgttttaccaatgggaacaaaaggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44037638 |
agaacaatacaaagatgtgaacaattacataatgaaaacgacaagaaagaaaaagggaaaataaagagatgattgtgttttaccaatgggaacaaaaggg |
44037737 |
T |
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| Q |
116 |
ttcctaacgcgcttcttctcttcaagaaaatcttcgaaaccgggttcaggactacccattttgatggttatacccgaattgaagaagaacttgaaagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44037738 |
ttcctaacgcgcttcttctcttcaagaaaatcttcgaaaccgggttcaggactacccattttgatggttatacccgaatt---gaagaacttgaaagaaa |
44037834 |
T |
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| Q |
216 |
gaaggaaccgaacgagaatgtatcaaccgaatcaatcaatatattaatatatgaatcaaagagggtctcgcgctattccaaacaaacactgtctttactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44037835 |
gaaggaaccgaacgagaatgtatcaaccgaatcaatcaat------atatatgaaacaaagagggtctcgcgctattccaaacaaacaccgtctttactt |
44037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 44037947 - 44037985
Alignment:
| Q |
346 |
tttcttatgtctgtcttaaatacttgttttcttctcact |
384 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
44037947 |
tttcttatgtctgtcttaaatacttgtttttttgtcact |
44037985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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