View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_2 (Length: 560)
Name: NF7962_high_2
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 41265921 - 41265403
Alignment:
| Q |
13 |
gagatgaacaaacagaccacacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagaga |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41265921 |
gagaggaacaaacagaccacacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagaga |
41265822 |
T |
|
| Q |
113 |
ctaatatcttttggaagaagaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcag |
212 |
Q |
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| T |
41265821 |
ctaatatcttttggaagaagaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcag |
41265722 |
T |
|
| Q |
213 |
agaatttggataaacaacaaaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgtatagtaaaaggttccaacc |
312 |
Q |
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| T |
41265721 |
agaatttggataaacaa-aaaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgcatagtaaaaggttccaacc |
41265623 |
T |
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| Q |
313 |
tctttgaaatannnnnnnnggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatg |
412 |
Q |
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||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41265622 |
tctttgaaatatattttttggtgttcggggttcaaacat----------atatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatg |
41265533 |
T |
|
| Q |
413 |
aataatacaaaacataaagtaaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgaga |
512 |
Q |
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| T |
41265532 |
aataatacaaaacataaagtaaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgaga |
41265433 |
T |
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| Q |
513 |
caagaggcttttattgaggttcctgcaagt |
542 |
Q |
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| T |
41265432 |
caagaggcttttattgaggttcctgcaagt |
41265403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 1120030 - 1120070
Alignment:
| Q |
339 |
ggggttcgaacatcaaaccatacatatattatgtattgtcc |
379 |
Q |
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| T |
1120030 |
ggggttcgaacaccaaactttacatatattatgtattgtcc |
1120070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 50676893 - 50676942
Alignment:
| Q |
332 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccct |
381 |
Q |
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| T |
50676893 |
ggtgttcggggttcgaaccccaacccctacatataatatgtattgtccct |
50676942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 5117266 - 5117230
Alignment:
| Q |
343 |
ttcgaacatcaaaccatacatatattatgtattgtcc |
379 |
Q |
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| T |
5117266 |
ttcgaacctcaaaccttacatatattatgtattgtcc |
5117230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 23979408 - 23979453
Alignment:
| Q |
332 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgt |
377 |
Q |
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| T |
23979408 |
ggtggtcggggtttgaaccccaaaccatacatatattatgtattgt |
23979453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 12126932 - 12126892
Alignment:
| Q |
338 |
cggggttcgaacatcaaaccatacatatattatgtattgtc |
378 |
Q |
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| T |
12126932 |
cggggtttgaacctcaaaccttacatatattatgtattgtc |
12126892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 43826445 - 43826481
Alignment:
| Q |
343 |
ttcgaacatcaaaccatacatatattatgtattgtcc |
379 |
Q |
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| T |
43826445 |
ttcgaacatcataccttacatatattatgtattgtcc |
43826481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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