View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_20 (Length: 355)
Name: NF7962_high_20
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 47390455 - 47390125
Alignment:
| Q |
19 |
aagacatgggtatacggcacaatacttcaaattctactgcacatttcaaattttctgcatccgtatctatgttttgttgatatttgattgcatgtattta |
118 |
Q |
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| T |
47390455 |
aagacatgggtatacggcacaatacttcaaattctatggcacatttcaaattttctgcatccgtatctatgttttgttgatatttgattgcatgtattta |
47390356 |
T |
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| Q |
119 |
tgcacacacaccagaatagttcatggcagaatgtggttcaaagcagctgctccaaaatatgacacagctgctaagcagatagcagaatt--------acc |
210 |
Q |
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| T |
47390355 |
tgcac--acaccagaatagttcatggcagaatgtggttcgaagcagctgctccaaaatatgacacagctgctaagcagatagcagaattaccatgacacc |
47390258 |
T |
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| Q |
211 |
aaagataaatgcaatgtcgaattttttataatctgtaatacacacataattggtatttgatactaaaagtctccagtactcaagagtcaagacacattta |
310 |
Q |
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| T |
47390257 |
aaagataaatgcaatgtcgaattttttataatctgtaatacacacataattggtatttgatactaaaagtctccagtactcaagagtcaagacacattta |
47390158 |
T |
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| Q |
311 |
tcattaacaatcaaaaagtacttcttgattctc |
343 |
Q |
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| T |
47390157 |
tcattaacaatcaaaaagtacttcttgattctc |
47390125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 208 - 343
Target Start/End: Original strand, 40625502 - 40625644
Alignment:
| Q |
208 |
accaaagataaatgcaatgtcgaattttttataatctgtaatacacacataattggtatttg-atactaaaagt-ctccagtactcaagagtcaagacac |
305 |
Q |
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|||| ||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
40625502 |
accatagatagatgcaatgtgaatttttttataatttgtaatacacacataattggtatttgtatactaaaagtactccagtactcaagagtcaagacac |
40625601 |
T |
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| Q |
306 |
atttatcattaacaatcaaa-----aagtacttcttgattctc |
343 |
Q |
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| T |
40625602 |
atttatcattaataatcaaaatttcaagtacttcttgattctc |
40625644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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