View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7962_high_22 (Length: 339)
Name: NF7962_high_22
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_22 |
 | |
|
| [»] chr7 (19 HSPs) |
| |
|
| [»] scaffold0182 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21792013 - 21792332
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21792013 |
agatacaaagggtggcagagtatctcagaaagagagaaaattttgagaagcattacatcccaaggtttgtatcaataggtcccatccatcatggcagtac |
21792112 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21792113 |
agatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaaaactgaaagcattctgaaagatctgcacaaaaagattgccgat |
21792212 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21792213 |
aacattgatacgctgaaggatcgttttagcgatgatgttttaactttaacccgcaagtctcttgacggctttggtagcctcgaagaaaagctgtcatgga |
21792312 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
21792313 |
tattgttcgtggatggatgt |
21792332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 21788233 - 21788550
Alignment:
| Q |
22 |
atacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtacaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| | || | ||| | || ||||||| |||||||||| || |||| |
|
|
| T |
21788233 |
atacaaagggtggcagagtatctcagaaatagaaaaaactttgagaagcattactcgcccaagttgttgtcggtaggtcctatccatcatgacaacacaa |
21788332 |
T |
|
| Q |
122 |
atctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataa |
221 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||| | |||||||||||||||||||| ||||| |
|
|
| T |
21788333 |
atttgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcgaaaacactggacacattccagaggatctgcacaaaaagattgcagataa |
21788432 |
T |
|
| Q |
222 |
cattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatg |
321 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
21788433 |
cattgatgaactgaagggtcattttggcgacgatgttttaactttaactggcaagtctcttgaaggctttggaagcctcgaagaaaagctgtcgtggatg |
21788532 |
T |
|
| Q |
322 |
ttgttcgtggatggatgt |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21788533 |
ttgttcgtggatggatgt |
21788550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21681652 - 21681971
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| || |||| ||| ||| |||| ||| ||| || || |||||| ||| | |||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
21681652 |
agatacaaagggtgccacggtatgtcaaaaatagaacaaaatttaaggagcattacagccccaagtttgtgtcaataggtcctatccatcatggcaatac |
21681751 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||| ||||||| ||||| ||| |
|
|
| T |
21681752 |
agatctaaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacactggaagcattcaaaaggatctatacaaaaaaattgctgat |
21681851 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||| | ||||||| |
|
|
| T |
21681852 |
aacattgatgaattgaagggccattttagcgacgatgttttaactttaaccggcgagtctcttgaaggctatcatagccttgaagaaaagttatcatgga |
21681951 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21681952 |
tgttgttcgtggatggatgt |
21681971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 15713625 - 15713943
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || ||||||| ||||| | ||||| | || | ||| || |||||||| || |||||||||| || ||| |
|
|
| T |
15713625 |
agatacaaagggtgccaggctatctcagaaaaagtaaaaattatgagatgcattacgcacctaagttggtttcaataggccctatccatcatgacaatac |
15713724 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| | || ||||||||||||||||| ||| |
|
|
| T |
15713725 |
aaatctaaagtcaggggagaagtacaagcttatgtgggcggcaaaatacatcaaaaacactggaagcattctagaggaactgcacaaaaagattgctgat |
15713824 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| |||||| |||||||||| || |||||||||||||||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
15713825 |
aacattgatgaactgaagtgtcattttagtgacgatgttttaactttaaccggaaagtcacttcaaggatttggtagcctagaagaaaagctgtcatgga |
15713924 |
T |
|
| Q |
320 |
tgttgttcgtggatggatg |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15713925 |
tgttgttcgtggatggatg |
15713943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 21808311 - 21807993
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||| |||||||| ||||| | || | ||| |||||||||||||| ||||||||||| | || |
|
|
| T |
21808311 |
agatacaaagggtggctgagtatctcagaaatagaacaaatcttgagaagcattactcacccaagttggtatcaataggtcctatccatcatggaaatat |
21808212 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | || ||||||| |||||| | |||| | ||||| |||||||||||||| ||| |
|
|
| T |
21808211 |
aaatctgaagttaggagagaagtacaagcttatgtggtctgcgaaatacatagaaaacagcggctttattctagaggatctacacaaaaagattgctgat |
21808112 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21808111 |
aacatcgatgaactgaagggtcattttggcgacgatgttttaactttaaccggccagtctcttgaaggctttggtagccttgaagaaaagctgtcatgga |
21808012 |
T |
|
| Q |
320 |
tgttgttcgtggatggatg |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21808011 |
tgttgttcgtggatggatg |
21807993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 21646745 - 21647058
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||| ||| |||||| || |||||||||| | ||| || ||||||||||| |||||||||| || | | |
|
|
| T |
21646745 |
agatacaaagggtgccacagtatctcagaaatagaacaaaatttgaggagcattacacccccaagttggtgtcaataggtcctatccatcatgacaatcc |
21646844 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||| ||| || |||||||||| ||||||||||||||||||||| |||||||||||||||| | ||| ||| |||| ||||| ||||||||||||| ||| |
|
|
| T |
21646845 |
aaagctgaagataggagagaaatacaagcttatgtgggcagcaaaatacatcaaaaacacgggaagaattaagaaggatctacacaaaaagattgtagat |
21646944 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
21646945 |
aacattgatgaactgaagggtcattttagcgacgacgttttaactttgaccggcaagtctcttaaaggcttccgtagccttgaagaaaagttgtcgtgga |
21647044 |
T |
|
| Q |
320 |
tgttgttcgtggat |
333 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
21647045 |
tattgttcgtggat |
21647058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 91 - 339
Target Start/End: Original strand, 21623266 - 21623514
Alignment:
| Q |
91 |
tcaataggtcccatccatcatggcagtacaaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattc |
190 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
21623266 |
tcaataggtcctatccatcatggcaatacaaatctgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacaccagaaaagttc |
21623365 |
T |
|
| Q |
191 |
agaaagatctgcacaaaaagattgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctt |
290 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21623366 |
agaaggatatgcacaacaagattgctgataatattgatgaactgaagggtcattttagtgacgatgttttaactttaaccggaaagtctcttgaaggctt |
21623465 |
T |
|
| Q |
291 |
tggtagcctcgaagaaaagctgtcatggatgttgttcgtggatggatgt |
339 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21623466 |
tggtagcattaaagaaaagctgtcgtggatgttgttcgtggatggatgt |
21623514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 21689415 - 21689733
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| |||| ||||||||| |||| ||||||||||| | |||| |||||| ||||||||||||| || |
|
|
| T |
21689415 |
agatacaaagggtgcaagagtatctcagaaatagagaaaaatttgagaagcattagaccccgaggttgatgtcaaaaggtcctatccatcatggcaataa |
21689514 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||| |
|
|
| T |
21689515 |
atctctaaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacactggaagcattcagagggatctacacaaaaacattgttgat |
21689614 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||||||||| || ||||| || ||||| |||||||||| ||| || ||||||||||| || |||| |
|
|
| T |
21689615 |
aacattgataaactgaagggtcattttgatgacgatgttttaacattgaccggaaattctctcgaaggctttgatagtcttgaagaaaagctatcgtgga |
21689714 |
T |
|
| Q |
320 |
tgttgttcgtggatggatg |
338 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
21689715 |
tgttgttggtggatggatg |
21689733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21785408 - 21785727
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| || ||||| ||||||||| ||||| | || | ||| || ||||||||||| |||||||||| || | | |
|
|
| T |
21785408 |
agatacaaagggtgcaagagtatctaagaaataggaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcatgacaatcc |
21785507 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| ||| ||||| || | || | | ||| || ||||| |||||||||||||||||| |
|
|
| T |
21785508 |
aaatctgaagacaggagagaagtacaagcttatgtgggccgcaaaatacctcgagaatataggccgcaatccacgcgatctacacaaaaagattgccgat |
21785607 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
21785608 |
aacattaatgaactgaagggtcattttagcgatgatgttttaactttaaccggccagtctcttgaagactttggtagccttgaagaaaagctgtcgtgga |
21785707 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
21785708 |
tgttgtttgtggatggatgt |
21785727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 21628127 - 21628445
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||||| || |||||||||| | |||| |||||| |||||||||| | || | |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
21628127 |
agatacaaagggtggccgatcatctcagaaataaaaaagattttgggaagtattactcacccaagtttgtgtcaataggtcctatccatcatggcagtac |
21628226 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||||||| || ||||||| |||||| || | |||| | || || |||||||||||||| ||| |
|
|
| T |
21628227 |
aaatctgaacataggagagaagtacaagcttgtgtgggcatcaaaatacatagaaaacattggacttattccagaggaactacacaaaaagattgctgat |
21628326 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||||||||| |||||| || || |||||| |||||||||| |||| |||||||||||||| |||| |
|
|
| T |
21628327 |
aacattgatgaactgaagggtcgttttagcgacgatgttttaaatttaacgggaaactctcttcaaggctttggatgccttgaagaaaagctgtcgtgga |
21628426 |
T |
|
| Q |
320 |
tgttgttcgtggatggatg |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21628427 |
tgttgttcgtggatggatg |
21628445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21652071 - 21652390
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||| ||||||||||| |||||||||| | |||||| ||||||||||| |||||||||| || ||| |
|
|
| T |
21652071 |
agatacaaagggtgccacagtatctcagaaatagaaacaattttgagaaacattacacccccaagtttgtttcaataggtcctatccatcatgacaatac |
21652170 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
|||| || | ||||||| |||| |||||||||||||||||| ||||||| |||||| | |||| | |||| |||||||||||||||||| |
|
|
| T |
21652171 |
aaatatgaaaccaggagaggagtataagcttatgtgggcagcaaaatacatagaaaacaacggctttattctagaggatcgacacaaaaagattgccgat |
21652270 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
|| ||| | || || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||| |||| |
|
|
| T |
21652271 |
aaaattaacgaactaaagggtcattttagcgacgatgttttaactttaactggcaagtctcttgaaggctttgatagccttgaagaaaagttgtcgtgga |
21652370 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21652371 |
tgttgttcgtggatggatgt |
21652390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21992175 - 21992503
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| | ||||||||| | ||| | || | || || ||||||||||| ||||||||||||| ||| |
|
|
| T |
21992175 |
agatacaaagggtggcagagtatctcaaaaatagaaaagactttgagaagcactactcacccaaattggtgtcaataggtcctatccatcatggcaatac |
21992274 |
T |
|
| Q |
120 |
aa---------atctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaag |
210 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| |||||||||| |||||||| |||| | | | | || ||||| ||||||||| |
|
|
| T |
21992275 |
aagcaatgcaaatctgaagttaggagagaagtacaagcttacgtgggcagcaaaatacatcgaaaatgcaggacttaatccatgcgatctacacaaaaag |
21992374 |
T |
|
| Q |
211 |
attgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagc |
310 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||| | || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21992375 |
attatcgataacattgatgaactgaagggtcattttagtgacgatgttttaactttagctggaaagtctcttgaaggctttggaagcctcgaagaaaagc |
21992474 |
T |
|
| Q |
311 |
tgtcatggatgttgttcgtggatggatgt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21992475 |
tgtcatggatgttgttcgtggatggatgt |
21992503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 21664100 - 21664421
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| || | |||||||||| |||||||| ||||||||||||||| | || | ||| | ||||||||||| ||||||||||||| ||| |
|
|
| T |
21664100 |
agatacaaagggtgccacacaatctcagaaacagaaaaaactttgagaagtattactcacccaagttcctgtcaataggtcctatccatcatggcaatac |
21664199 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
| ||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||| || | || || ||||| |||||||||||| ||| |
|
|
| T |
21664200 |
agatctgaagttaggagggaagtacaagcttatgtgggcagcaaaatacattgaaaatacaagactcaatccacgggatctacacaaaaagatttttgat |
21664299 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgt---tttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcat |
316 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
21664300 |
aacatcgatgaactgaagggtcattttgacgatgatgtaattttaactttaaccggcaagtctcttgaaggctttggaagccttgaagaaaagctgtcgt |
21664399 |
T |
|
| Q |
317 |
ggatgttgttcgtggatggatg |
338 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
21664400 |
ggatattgttcgtggatggatg |
21664421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21704645 - 21704964
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||| || ||||| | || | ||| || || |||||||| |||||||||| || | | |
|
|
| T |
21704645 |
agatacaaagggtgcaagagtatctcagaagtagaaaaaactttgagcagcattactcacccaagttagtgtcgataggtcctatccatcatgacaatcc |
21704744 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| | | |||| | || || |||||||||||||| ||| |
|
|
| T |
21704745 |
aactctgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatagaaaacaccggacttattccagaggaactacacaaaaagattgcagat |
21704844 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||| ||||||| || |||||| ||||||||| |||| || ||||||||||| |||| |
|
|
| T |
21704845 |
aacattgatgaactgaagggtcgttttagcgatgatgttttaactctaaccggaaactctcttcaaggctttgagtgccttgatgaaaagctgtcgtgga |
21704944 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
| |||||| ||||||||||| |
|
|
| T |
21704945 |
tattgttcatggatggatgt |
21704964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 44 - 339
Target Start/End: Original strand, 21714209 - 21714504
Alignment:
| Q |
44 |
tcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtacaaatctggagttaggagagaagta |
143 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||| | || | |||||| ||| ||||||| |||||||||| || | |||||||| || |||||||||||| |
|
|
| T |
21714209 |
tcagaaatagaacaaattttgagaagcattactcacccaagtttgtgtcattaggtcctatccatcatgacaatccaaatctgaagaaaggagagaagta |
21714308 |
T |
|
| Q |
144 |
caagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatgatctgaagggtcat |
243 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||| | ||||| | ||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
21714309 |
caaacttatgtgggcagcaaaatacatagaaaacaccagacacattccagaggatctacacaaaaagattgcagataacattgatgaactgaagggtcat |
21714408 |
T |
|
| Q |
244 |
tttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtggatggatgt |
339 |
Q |
| |
|
||| | | ||||||||| ||| |||| | |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
21714409 |
tttgacaacgatgttttagcttcaaccagttggtctcttgaaggctttggtagccttgaagaaaagctatcgtggatgttgttcgtggatggatgt |
21714504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 91 - 338
Target Start/End: Original strand, 21764135 - 21764382
Alignment:
| Q |
91 |
tcaataggtcccatccatcatggcagtacaaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattc |
190 |
Q |
| |
|
||||||||||| |||||||||| ||| || ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| | | | || |
|
|
| T |
21764135 |
tcaataggtcctatccatcatgacagatcagatctgaagttaggagagaagtacaagcttaagtgggcagcagaatacatagaaaacaccgcacttaatc |
21764234 |
T |
|
| Q |
191 |
agaaagatctgcacaaaaagattgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctt |
290 |
Q |
| |
|
| || || ||| |||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
21764235 |
cagaggaactacaccaaaagattgctgataacatcgatgaactgaagggtcgttttagcgatgatgttttaactttaactggaaagtctcttgaaggctt |
21764334 |
T |
|
| Q |
291 |
tggtagcctcgaagaaaagctgtcatggatgttgttcgtggatggatg |
338 |
Q |
| |
|
| |||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
21764335 |
tcatagccttgaagaaaagttgtcgtggatgttgttcgtggatggatg |
21764382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21725898 - 21726217
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| |||||||| ||||||||| ||||| | || | || ||| ||||||||||| || |||||| | || |
|
|
| T |
21725898 |
agatacaaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacac |
21725997 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||||||| |||| |||| ||||||| ||||||||||||||| ||||||| ||||||| | | ||||| | ||||| |||||||||||||| ||| |
|
|
| T |
21725998 |
aaatctgatattagcagagtagtacaaacttatgtgggcagcaaaatacatagaaaacaccggacacattccagaggatctacacaaaaagattgctgat |
21726097 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||||| ||| |||| | |||||||| ||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
21726098 |
aacattgatgaactgaagggtcattttgacgacgatgttttagcttcaaccagatggtctcttgcaggctttcgtagccttgaagaaaagctgtcgtgga |
21726197 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21726198 |
tgttgttcgtggatggatgt |
21726217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21771963 - 21772282
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| |||||||| ||||||||| ||||| | || | || ||| ||||||||||| || |||||| | || |
|
|
| T |
21771963 |
agatacaaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcataacac |
21772062 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||||||| ||||||| |||| | | | ||||| | ||||| |||||||||||||| ||| |
|
|
| T |
21772063 |
aaatctgatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaataacggatacattccagaggatctacacaaaaagattgctgat |
21772162 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||| |||| | |||||||| ||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
21772163 |
aacattgatgaactgaagggtcattttgacgatgatgttttaacttcaaccagatggtctcttgcaggctttcgtagccttgaagaaaagttgtcgtgga |
21772262 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21772263 |
tgttgttcgtggatggatgt |
21772282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 21745534 - 21745853
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
||||||||||||||| ||| |||||| ||| |||| ||||||||||||| ||||| | || | ||| || ||| ||||||| |||||||||| || | | |
|
|
| T |
21745534 |
agatacaaagggtggtagaccatctcataaatagaacaaattttgagaagcattactcacccaagttggtgtcattaggtcctatccatcatgacaatcc |
21745633 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgat |
219 |
Q |
| |
|
|||||| || |||||| |||| |||||||||||||||||| ||||| || | || || | || || | ||||||||||||||||||| ||| |
|
|
| T |
21745634 |
aaatctaaagacaggagaagagtataagcttatgtgggcagcaaaatacctcgagaatacaggccacaatccacacgatctgcacaaaaagattgttgat |
21745733 |
T |
|
| Q |
220 |
aacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatgga |
319 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||||||||| || || |||||| ||||||||| |||| |||||||||||||| |||| |
|
|
| T |
21745734 |
aacattgatgaactgaagggtcgttttagcgacgatgttttaactttaactggaaattctcttcaaggctttgaatgccttgaagaaaagctgtcgtgga |
21745833 |
T |
|
| Q |
320 |
tgttgttcgtggatggatgt |
339 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
21745834 |
tgttattcgtagatggatgt |
21745853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 25588 - 25694
Alignment:
| Q |
233 |
tgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtgga |
332 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
25588 |
tgaagggtcattttagcgaggatgttttaactttaactaaaaagtctcttgaaggctttggtacccttgaagaaaagctgtcgttgatgttgttcgtgga |
25687 |
T |
|
| Q |
333 |
tggatgt |
339 |
Q |
| |
|
||||||| |
|
|
| T |
25688 |
tggatgt |
25694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 25312 - 25472
Alignment:
| Q |
20 |
agatacaaagggtggcagagtatctcagaaagagaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtac |
119 |
Q |
| |
|
||||||||||||||||| | || | |||||||| | |||||| |||||| |||| || | ||| || ||||||||||| |||||||||| || || |
|
|
| T |
25312 |
agatacaaagggtggcatattaccgcagaaagataccaaatttgaggaagtactacaaacccaagttggtgtcaataggtcctatccatcatgacaataa |
25411 |
T |
|
| Q |
120 |
aaatctggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacact |
180 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
25412 |
aaatctgaagttaggagagaagtacaagcttaagtgggcagcagaatacatagaaaacact |
25472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 18192123 - 18192066
Alignment:
| Q |
282 |
tgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtggatggatgt |
339 |
Q |
| |
|
||||||||||| || | | ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18192123 |
tgaaggctttgataacttggaagaaaagctatcatggatgttgtttgtggatggatgt |
18192066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 18192346 - 18192237
Alignment:
| Q |
53 |
gaaaaaattttgagaagtattacaccccgaggtttgtatcaataggtcccatccatcatggcagtacaaatctggagttaggagagaagtacaagcttat |
152 |
Q |
| |
|
||||| ||||||||||| ||||| | || | || |||||||| ||||| ||||||||||| | ||||| |||||||| |||||||||||||||| |
|
|
| T |
18192346 |
gaaaagattttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcatggtcgcccaaatttggagttatgagagaagtacaagctaca |
18192247 |
T |
|
| Q |
153 |
gtgggcagca |
162 |
Q |
| |
|
|||||||||| |
|
|
| T |
18192246 |
gtgggcagca |
18192237 |
T |
|
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