View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_23 (Length: 327)
Name: NF7962_high_23
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 38645239 - 38645548
Alignment:
| Q |
1 |
tgcctgctcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatggactcttcttgatcgaagatttcgtctaggattgta |
100 |
Q |
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| T |
38645239 |
tgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatggactcttcttgatcgaagatttcgtctaggattgta |
38645338 |
T |
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| Q |
101 |
tttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttggagataagagatcttctgctgggagtggtgataaat |
200 |
Q |
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| T |
38645339 |
tttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttggagataagagatcttctgctgggagtggtgataaat |
38645438 |
T |
|
| Q |
201 |
tttctaaggtacactcatgcagctggttcatgtaaggaggggtgaatgagtaatcaaattgctcataattcatcacattcatggtagataattatcaaat |
300 |
Q |
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| T |
38645439 |
tttctaaggtacactcatgcagctggttcatgtaa------gtgaatgagtaatcaaattgctcataattcatcacattcatggtagataattatcaaat |
38645532 |
T |
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| Q |
301 |
aatggctcacacaggt |
316 |
Q |
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| T |
38645533 |
aatggctcacacaggt |
38645548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 38899265 - 38898971
Alignment:
| Q |
1 |
tgcctgctcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatggactcttcttgatcgaagatttcgtctaggattgta |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899265 |
tgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcagcaatccttgcatggactcttcttgatcgaagatttcgtctaggattgta |
38899166 |
T |
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| Q |
101 |
tttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttggagataagagatcttctgctgggagtggtgataaat |
200 |
Q |
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|||||| || || ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |
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| T |
38899165 |
tttggagatgagagatattgtgattggtcttgatcaaacaatatttcatctaggattgtatttggaaataagagatcttctgcttggagtggtgataaat |
38899066 |
T |
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| Q |
201 |
tttctaaggtacactcatgcagctggttcatgtaaggaggggtgaatgagtaatcaaattgctcataattcatcacattcatggtagataattat |
295 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38899065 |
tttctaagctacactcatgcagctggttcatgtaaggaggggtgaatgagtaatcaaattgctcataatccatcacattcatggtagataattat |
38898971 |
T |
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