View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_25 (Length: 318)
Name: NF7962_high_25
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4207048 - 4207344
Alignment:
| Q |
1 |
ctgagagttaaccttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaagtgaaagtaatgtaattttgtgaaatagtcgta |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||| |
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| T |
4207048 |
ctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaataatacaagtgaaagcaatgtaatttcgtgaa-tagtcgtg |
4207146 |
T |
|
| Q |
101 |
atgtactgttgcgcgatattaagcatttttgaattgtagtggatggtttgggatttaaacttccttattgtatttgttgttggctatgcattctctttag |
200 |
Q |
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| T |
4207147 |
atgtactgttgcgcgatattaagcatttttgaattgtagtggacggtttgggatttgaatttccttctcgtatttgttgttggttatgcattgtctttag |
4207246 |
T |
|
| Q |
201 |
ttcttgtttagctttttatgaccgtttgccttcatttttgtatcgtgtaacttattttcttggcatgtcttatgtcaagataaaataaatgaattata |
298 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4207247 |
ttcttgtttaactttttatgatcgtttgccttcacttttgtatcgtgtaacttattttcttggcatgtcttatgtcaagataaaataaatgaattata |
4207344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33418099 - 33417972
Alignment:
| Q |
1 |
ctgagagttaaccttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaagtgaaagtaatgtaattttgtgaaatagtcgta |
100 |
Q |
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|||||||||||| |||||||||||| | ||||| ||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
33418099 |
ctgagagttaactttggataccaaactcatcatctaagaaagaaattaaattaattaaacaatacaagtcgaagcaatgtaattttgtgaaatagtcgtg |
33418000 |
T |
|
| Q |
101 |
atgtactgttgcgcgatattaagcattt |
128 |
Q |
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|||||| || || ||||||||||||| |
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| T |
33417999 |
atgtacaattttgcaatattaagcattt |
33417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 38881417 - 38881352
Alignment:
| Q |
4 |
agagttaaccttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaagt |
69 |
Q |
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||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| |||||||||| |
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| T |
38881417 |
agagttaactttagataccaaactcatcatttaagagagaaactaaattaattaagcaatacaagt |
38881352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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