View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_26 (Length: 316)
Name: NF7962_high_26
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 29592806 - 29592522
Alignment:
| Q |
16 |
attatcaggatcatagcatggttttccctgcaacaatggagaacaatccacttttcctggtccacaagcccaatcaattccagcctgcaacatctttgga |
115 |
Q |
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| T |
29592806 |
attatcaggatcatagcatggttttccctgcaacaatggagaacaatccacttttcctggtccacaagcccaatcaattccagcctgcaacatctttgga |
29592707 |
T |
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| Q |
116 |
tcagcaccatctttagcaacgcaataagtttcaccttttgtatcatttgccaaaactgcacctgaacctgtcaattgcaaaacataaacaggcacaccat |
215 |
Q |
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| T |
29592706 |
tcagcaccatctttagcaacgcaataagtttcaccttttgtatcatttgccaaaactgcacctgaacctgtcaattgcaaaacataaacaggcacaccat |
29592607 |
T |
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| Q |
216 |
ttgaatcaaatagtccccaatttttctctgacattgcccctggctgtttgtcctcgttgtagagctcgtagatataagtactaac |
300 |
Q |
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| T |
29592606 |
ttgaatcaaatagtccccaatttttctctgacaatgcccctggctgtttgtcctcgttgtagagctcgtagatataagtactaac |
29592522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 11209678 - 11209726
Alignment:
| Q |
44 |
tgcaacaatggagaacaatccacttttcctggtccacaagcccaatcaa |
92 |
Q |
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| T |
11209678 |
tgcaacaaaggtgaacaatccaccttccctggtccacaagcccaatcaa |
11209726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 33415523 - 33415249
Alignment:
| Q |
26 |
tcatagcatggttttccctgcaacaatggagaacaatccacttttcctggtccacaagcccaatcaattccagcctgcaacatctttggatcagcaccat |
125 |
Q |
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| T |
33415523 |
tcataacatggttgcccttgcagcaatgaagagcattccacttttccaggtccgcatgcccaatctaatgcagcctgtatcatctttgggtcagcaccgt |
33415424 |
T |
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| Q |
126 |
ctttagcaacgcaataagtttcaccttttgtatcatttgccaaaactgcacctgaacctgtcaattgcaaaacataaacaggcacaccatttgaatcaaa |
225 |
Q |
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| || || | ||| |||||| | | || || || ||||| || || ||||| |||| ||| || || | |||| ||| |||||||||| |||||| |
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| T |
33415423 |
cctttgcgatgcagaaagtttgattgctggtgtcgttcgccaacaccgctcctgatcctgccaagtgtaatatgtaaatagggacaccatttgcatcaaa |
33415324 |
T |
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| Q |
226 |
tagtccccaatttttctctgacattgcccctggctgtttgtcctcgttgtagagctcgtagatataagtactaac |
300 |
Q |
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| T |
33415323 |
caatccccagtttttctccgacaatggccctgatttcgtatcctcgttgtagagttcatagatgtaagtactaac |
33415249 |
T |
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