View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_29 (Length: 305)
Name: NF7962_high_29
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 9970423 - 9970514
Alignment:
| Q |
101 |
aggttgagtttcaaactgctgcaggacagatggtagatttgatcaccacactggaaggagaaaaagacctgtccaaatacaccttatcactg |
192 |
Q |
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| T |
9970423 |
aggttgagtttcaaactgctgcaggacagatgatcgatttgatcaccacactggaaggagaaaaagacctgtccaaatacaccttatcactg |
9970514 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 9970249 - 9970345
Alignment:
| Q |
8 |
atggagttctactaagaaaccatattccgtgtatccttaggatacacttcaagggaaagtcgtattaagttgaatttcttgatttgttcaatgaggt |
104 |
Q |
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| T |
9970249 |
atggagttctactaagaaaccatattccgcgtatccttaggaaacacttcaagggaaagccgtattatgttgaacttcttgatttgttcaatgaggt |
9970345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 9971007 - 9971059
Alignment:
| Q |
192 |
gcaccggcgtattgttcagtacaagactgcctattattcattttaccttccag |
244 |
Q |
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| T |
9971007 |
gcaccggcgtattgttcagtacaagactgcctattattcattttaccttccag |
9971059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 9971481 - 9971525
Alignment:
| Q |
246 |
tgcatgtgcattactaatggctggtgaaaatctggataaccatgt |
290 |
Q |
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| T |
9971481 |
tgcatgtgcattgctaatggctggtgaaaatttggataaccatgt |
9971525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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