View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_5 (Length: 526)
Name: NF7962_high_5
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 28684466 - 28683958
Alignment:
| Q |
1 |
tacacaaataagttttctctttcgatataannnnnnn-atacacacgagcctttgatcacatgttttacaacttggatcgatccattgttagtgaataaa |
99 |
Q |
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||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28684466 |
tacacaaataaattttctctttcgatataattttttctatacgcacgagcctttgatcacatgttttacaacttggatcgatccattgttagtgaataaa |
28684367 |
T |
|
| Q |
100 |
tttgtatatcttatagtatatgtgtgtaaattttcacataaattatttaaaaatatccaatatatattgaatagtcaaattaccagctcaacttgtgtga |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28684366 |
tttgtatatcttatagtatatgtgtataaattttcacataaattatttaaaaatatccaatatatattgaatagtcaaattaccagctcaacttgtgtga |
28684267 |
T |
|
| Q |
200 |
tttgtcccttgccagcccaactttttaggggagaaacaaattacgatttagcaaaattcacaagtggctcctgtcaacaacaaaaatcacaagtagaaga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28684266 |
tttgtcccttgccagcccaactttttaggggagaaacaaattacgatttagcaaaattcacaagtggctcctgtcaacaacaaaaatcacaagtagaaga |
28684167 |
T |
|
| Q |
300 |
ttgccataatatcaatctttttcaatatcaacatgtgtttcatacaaggaaacaacccatatgtaccatatatcctgccccaaaaagagtcctttgtacc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28684166 |
ttgccataatatcaatctttttcaatatcaacatgtgtttcatacaaggaaacaacccatatgtaccatatatcttgccccaaaaagagtcctttgtacc |
28684067 |
T |
|
| Q |
400 |
aagttaatcaatttgaacttttcaagtactaaacaaacatcaaatctaggtgaaacagaaaatacatgaggtgaagtggtaaacattaaataaagcatat |
499 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28684066 |
aagttaatcaatttgaacttttgaagtactaaacaaacatcaaatctaggtgaaacagaaaatacatgaggtgaaatggtaaacattaaataaagcatat |
28683967 |
T |
|
| Q |
500 |
gaaaaagtt |
508 |
Q |
| |
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||||||||| |
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| T |
28683966 |
gaaaaagtt |
28683958 |
T |
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