View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_high_7 (Length: 492)
Name: NF7962_high_7
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 86 - 479
Target Start/End: Original strand, 6454314 - 6454707
Alignment:
| Q |
86 |
agtactctatactataccctaattaaatcacatcctaaaatgcatactttattttcacctttgttagaaccagacctatctttaaacataagtcttcctt |
185 |
Q |
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| T |
6454314 |
agtactctatactataccctaattaaatcacatcctaaaatgcatactttattttcacctttgttagaaccagacctatctttaaacataagtcttcctt |
6454413 |
T |
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| Q |
186 |
ctaatatttctgattctgaacccaaaggaataacaaatatatgttcaatatcaactacttctgattcagctagtagtggaagtgagttaagccatgaaaa |
285 |
Q |
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| T |
6454414 |
ctaatatttctgattctgaacccaaaggaataacaaatatatgttcaatatcaactacttctgattcagctagtagtggaagtgaattaagccatgaaaa |
6454513 |
T |
|
| Q |
286 |
tccatttatctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgatgaatccacatcatcataatcatcaccttcatcgt |
385 |
Q |
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| T |
6454514 |
tccatttatctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgatgaatccacatcatcataatcatcaccttcatcgt |
6454613 |
T |
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| Q |
386 |
catcaagttcaaggtgtttcaagaaactttaaccaacacttccaacctcacatctatggccgcgatttcaagcgaaatacaagagtcgttaatg |
479 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6454614 |
catcaagttcaaggggtttcaagaaactttaaccaacacttccaacctcacatctatggccgcgatttcaagcgaaatacaagagtcgttaatg |
6454707 |
T |
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