View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_high_8 (Length: 485)

Name: NF7962_high_8
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_high_8
NF7962_high_8
[»] chr2 (9 HSPs)
chr2 (17-200)||(15996537-15996720)
chr2 (279-469)||(15996790-15996980)
chr2 (309-358)||(21620768-21620817)
chr2 (309-358)||(26051200-26051249)
chr2 (311-354)||(15080088-15080130)
chr2 (309-355)||(11563421-11563467)
chr2 (309-358)||(4860579-4860627)
chr2 (311-356)||(31596951-31596996)
chr2 (318-358)||(32227431-32227471)
[»] chr3 (9 HSPs)
chr3 (309-358)||(50170585-50170634)
chr3 (318-358)||(37662918-37662958)
chr3 (321-357)||(3382572-3382608)
chr3 (316-352)||(50129033-50129069)
chr3 (168-198)||(28945979-28946009)
chr3 (163-200)||(50129187-50129224)
chr3 (318-358)||(28451856-28451896)
chr3 (168-200)||(37238752-37238784)
chr3 (316-352)||(50129171-50129207)
[»] chr1 (10 HSPs)
chr1 (309-358)||(19234792-19234841)
chr1 (311-357)||(25901896-25901942)
chr1 (278-357)||(38081668-38081750)
chr1 (316-352)||(34967758-34967794)
chr1 (312-358)||(30058347-30058393)
chr1 (309-354)||(36567456-36567501)
chr1 (318-358)||(298195-298235)
chr1 (318-358)||(3491551-3491591)
chr1 (318-358)||(14149442-14149482)
chr1 (318-358)||(52413957-52413997)
[»] chr6 (4 HSPs)
chr6 (311-358)||(11753073-11753120)
chr6 (320-358)||(12622500-12622538)
chr6 (309-358)||(5605238-5605287)
chr6 (309-356)||(15528452-15528499)
[»] chr4 (16 HSPs)
chr4 (311-357)||(52355968-52356014)
chr4 (309-358)||(30666828-30666877)
chr4 (309-357)||(22318094-22318142)
chr4 (308-355)||(51164636-51164683)
chr4 (309-354)||(10401598-10401643)
chr4 (309-357)||(46963964-46964012)
chr4 (311-354)||(13435479-13435522)
chr4 (312-363)||(45891757-45891808)
chr4 (309-354)||(5817325-5817370)
chr4 (308-353)||(25064192-25064237)
chr4 (309-354)||(37861163-37861208)
chr4 (317-358)||(54933086-54933127)
chr4 (318-358)||(22409468-22409508)
chr4 (318-358)||(32280428-32280468)
chr4 (321-365)||(46393114-46393158)
chr4 (311-355)||(53209998-53210042)
[»] chr8 (5 HSPs)
chr8 (309-354)||(8059901-8059946)
chr8 (311-358)||(30875630-30875677)
chr8 (309-355)||(8753345-8753391)
chr8 (171-200)||(9399672-9399701)
chr8 (318-358)||(40819427-40819467)
[»] chr7 (10 HSPs)
chr7 (309-356)||(6271389-6271436)
chr7 (311-358)||(43132016-43132063)
chr7 (309-347)||(31765469-31765507)
chr7 (318-357)||(40720365-40720404)
chr7 (315-353)||(37828459-37828497)
chr7 (311-352)||(5505602-5505643)
chr7 (329-366)||(41888943-41888980)
chr7 (316-352)||(18700065-18700101)
chr7 (172-200)||(24393632-24393660)
chr7 (311-351)||(30961666-30961706)
[»] chr5 (4 HSPs)
chr5 (278-357)||(11991528-11991607)
chr5 (318-358)||(40113066-40113106)
chr5 (311-364)||(523618-523671)
chr5 (309-357)||(28735399-28735446)
[»] scaffold0024 (1 HSPs)
scaffold0024 (312-354)||(45935-45977)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 15996537 - 15996720
Alignment:
Q  17 gagggagagaattgaaatcaaaggtccgtaattagctcgtgaatcaacttttcgtggtaacaatcggttcccttaattctaaaggtgtggtagtttggta 116  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  15996537 gagggagagaattgaaatcaaaggcccgtaattagcccgtgaatcaacttttcgtggtaacaatcgtttcccttagttctaaaggtgtggtagtttggta 15996636  T
Q  117 cttattttttataatagtggtactgtcattaaaaaacatatttttctattcattttatgggtcatgttaacttgtgcccttagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  15996637 cttattttttataatagtggtactgtcattaaaaaacatatttttgtattcattttataggtcatgttaacttgtgcctttagg 15996720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 279 - 469
Target Start/End: Original strand, 15996790 - 15996980
Alignment:
Q  279 ttgaatgcacaatttccaagaannnnnnn-cacatttggtttcttaacttatgccccaagggcacaagttaacatttccctcattttattagtgagagag 377  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  15996790 ttgaatgcacaatttccaagaattttttttcacatttggtttcttaacttatgccccaagagtacaagttaacatttccctcattttattagtgagagag 15996889  T
Q  378 tacttttaagtaagtaatgtcgaaggaattaatgacatatttataacttctgatacctagaatatttgtaacctcaatgattaattccaaaa 469  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15996890 tacttt-aagtaagtaatgtcgaaggaattaatgacatatttataacttctgatacctagaatatttgtaacctcaatgattaattccaaaa 15996980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 21620768 - 21620817
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  21620768 acatttggtttcttaacttatgcctcaaaggcacaagttaacatttccct 21620817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 26051249 - 26051200
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||| ||||||||||||||| |||||| |||||||||||||| |||||    
T  26051249 acatttagtttcttaacttatgtcccaagagcacaagttaacatctccct 26051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 15080130 - 15080088
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  15080130 atttggttttttaacttatgccc-aagggcacaagttaacattt 15080088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 11563467 - 11563421
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttc 355  Q
    |||||| | ||||||||||||| ||||||||||||||||| ||||||    
T  11563467 acatttagcttcttaacttatgtcccaagggcacaagttagcatttc 11563421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 4860579 - 4860627
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  4860579 acatttgtcttcttaacttatgcct-aagggcacaagttaacatttccct 4860627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 31596996 - 31596951
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttcc 356  Q
    ||||| ||||||||| |||||| ||||||||||||||| |||||||    
T  31596996 atttgatttcttaacatatgcctcaagggcacaagttagcatttcc 31596951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 32227471 - 32227431
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  32227471 ttcttaacatatgccctaagggcacatgttaacatttccct 32227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 50170585 - 50170634
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50170585 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 50170634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 37662958 - 37662918
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37662958 ttcttaacttatgccccaagggcacaagttaacatttccct 37662918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 3382608 - 3382572
Alignment:
Q  321 ttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||||||||||||||||||||||||||||||||||||    
T  3382608 ttaacttatgccccaagggcacaagttaacatttccc 3382572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 50129069 - 50129033
Alignment:
Q  316 gtttcttaacttatgccccaagggcacaagttaacat 352  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50129069 gtttctaaacttatgccccaagggcacaagttaacat 50129033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 28946009 - 28945979
Alignment:
Q  168 attttatgggtcatgttaacttgtgccctta 198  Q
    |||||||||||||||||||||||||||||||    
T  28946009 attttatgggtcatgttaacttgtgccctta 28945979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 50129224 - 50129187
Alignment:
Q  163 tattcattttatgggtcatgttaacttgtgcccttagg 200  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  50129224 tatttattatatgggtcatgttaacttgtgcccttagg 50129187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 28451856 - 28451896
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  28451856 ttcttaacatgtgccctaagggcacaagttaacatttccct 28451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 37238752 - 37238784
Alignment:
Q  168 attttatgggtcatgttaacttgtgcccttagg 200  Q
    |||||| ||||||||||||||||||||||||||    
T  37238752 attttaagggtcatgttaacttgtgcccttagg 37238784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 50129171 - 50129207
Alignment:
Q  316 gtttcttaacttatgccccaagggcacaagttaacat 352  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  50129171 gtttcttaacttgtgccctaagggcacaagttaacat 50129207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 19234841 - 19234792
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19234841 acatttggtttcttaacttatgccgcaagggcacaagttaacatttccct 19234792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 25901896 - 25901942
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  25901896 atttagtttcttaacttatgtcccaagggcacaagttaacatttccc 25901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 38081668 - 38081750
Alignment:
Q  278 attgaatgcacaatttccaagaannnnnnnca-catttggtttcttaacttatgcccc--aagggcacaagttaacatttccc 357  Q
    |||||||||||||||||||||||       || ||||| |||||||||||||||||||  |||||||||||||| ||||||||    
T  38081668 attgaatgcacaatttccaagaaaaaacttcaacatttagtttcttaacttatgcccccgaagggcacaagttagcatttccc 38081750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 34967758 - 34967794
Alignment:
Q  316 gtttcttaacttatgccccaagggcacaagttaacat 352  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34967758 gtttcttaacttgtgccccaagggcacaagttaacat 34967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 30058393 - 30058347
Alignment:
Q  312 tttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||| ||||||||||| | |||| ||||||||||||||||||||    
T  30058393 tttggttccttaacttatgtctcaagagcacaagttaacatttccct 30058347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 36567456 - 36567501
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    |||||| |||||||||||| ||||| || |||||||||||||||||    
T  36567456 acatttagtttcttaacttctgccctaaaggcacaagttaacattt 36567501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 298235 - 298195
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  298235 ttcttaacatgtgccctaagggcacaagttaacatttccct 298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 3491551 - 3491591
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  3491551 ttcttaacatttgccctaagggcacaagttaacatttccct 3491591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 14149482 - 14149442
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||| ||||||||| ||||||||||||||| ||||||||    
T  14149482 ttcttatcttatgccctaagggcacaagttaatatttccct 14149442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 52413957 - 52413997
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||| ||||  ||||||||||||||||||||||||    
T  52413957 ttcttaacttgtgccttaagggcacaagttaacatttccct 52413997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 11753073 - 11753120
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11753073 atttggtttcttaacttatgtcccaagggcacaagttaacatttccct 11753120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 12622538 - 12622500
Alignment:
Q  320 cttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  12622538 cttaacttatgcctcaagggcacaagttaacatttccct 12622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 5605287 - 5605238
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||||||    
T  5605287 acatttgatttcttaacttatgccccaaaggcacaaattatcatttccct 5605238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 15528452 - 15528499
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttcc 356  Q
    |||||| |||| |||||||||||||||||  |||||||||||||||||    
T  15528452 acatttagttttttaacttatgccccaagaacacaagttaacatttcc 15528499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 52355968 - 52356014
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  52355968 atttggtttcttaacttatgcctcaagggcacaagttaacatttccc 52356014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 30666877 - 30666828
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  30666877 acatttggtttcttaacttgtgcctcaagggcacaagttaacatttccct 30666828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 22318142 - 22318094
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  22318142 acatttggttccttaacttatgccccaagagcacaaattaacatttccc 22318094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 51164636 - 51164683
Alignment:
Q  308 cacatttggtttcttaacttatgccccaagggcacaagttaacatttc 355  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  51164636 cacatttagtttcttaacttctgcctcaagggcacaagttaacatttc 51164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 10401598 - 10401643
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    |||||||||||||||||||||||| |||||||| || |||||||||    
T  10401598 acatttggtttcttaacttatgcctcaagggcataaattaacattt 10401643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 46963964 - 46964012
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    ||||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  46963964 acatttggtttctaaacttgtgccttaagggcacaagttaacatttccc 46964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 13435479 - 13435522
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||    
T  13435479 atttggtttcttaacttatgtcccaagggcacgagttatcattt 13435522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 45891808 - 45891757
Alignment:
Q  312 tttggtttcttaacttatgccccaagggcacaagttaacatttccctcattt 363  Q
    |||||||||||||||| ||||  ||| |||||||||||||||||||| ||||    
T  45891808 tttggtttcttaacttgtgccttaagagcacaagttaacatttcccttattt 45891757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 5817370 - 5817325
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    |||||||| ||| ||||||||||  |||||||||||||||||||||    
T  5817370 acatttgggttcgtaacttatgcttcaagggcacaagttaacattt 5817325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 25064192 - 25064237
Alignment:
Q  308 cacatttggtttcttaacttatgccccaagggcacaagttaacatt 353  Q
    |||||||  |||||||||||||| | ||||||||||||||||||||    
T  25064192 cacatttactttcttaacttatgtctcaagggcacaagttaacatt 25064237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 37861208 - 37861163
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||||    
T  37861208 acatttggtttctaaacttgtgccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 54933127 - 54933086
Alignment:
Q  317 tttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||| |||||| | |||||||||||||||||||    
T  54933127 tttcttaacttataccccaatgacacaagttaacatttccct 54933086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 22409468 - 22409508
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  22409468 ttcttaacatgtgccctaagggcacaagttaacatttccct 22409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 32280428 - 32280468
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||| |  ||||||||||||||||||||||||    
T  32280428 ttcttaacttatgtcttaagggcacaagttaacatttccct 32280468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 46393158 - 46393114
Alignment:
Q  321 ttaacttatgccccaagggcacaagttaacatttccctcatttta 365  Q
    ||||||||||||  |||| ||||||||||||||||||| ||||||    
T  46393158 ttaacttatgccttaaggacacaagttaacatttccctaatttta 46393114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 53210042 - 53209998
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttc 355  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||    
T  53210042 atttggttccttaacttatgcttcaaggacacaagttaacatttc 53209998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 8059946 - 8059901
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  8059946 acatttggtttcttaacttatgcctcaagggcacaagttaacattt 8059901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 30875677 - 30875630
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||    
T  30875677 atttggtttcttaacttatgcctcaaagacacaagttaacatttccct 30875630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 8753345 - 8753391
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttc 355  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||    
T  8753345 acatttagtttcttaacttatgcctcgagggcacaagttaacatttc 8753391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 9399701 - 9399672
Alignment:
Q  171 ttatgggtcatgttaacttgtgcccttagg 200  Q
    ||||||||||||||||||||||||||||||    
T  9399701 ttatgggtcatgttaacttgtgcccttagg 9399672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 40819427 - 40819467
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  40819427 ttcttaacttatgccccaaagatacaagttaacatttccct 40819467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 6271389 - 6271436
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttcc 356  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  6271389 acatttgctttcttaacttatgccccaagggcataagttaacatttcc 6271436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 43132016 - 43132063
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  43132016 atttgatttcttaacttatgccccaagggcacaagttagcatttccct 43132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 31765469 - 31765507
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagtt 347  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  31765469 acatttggtttcttaacttatgccccaaaggcacaagtt 31765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 40720404 - 40720365
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  40720404 ttcttaatttatgccccaagcgcacaagttaacatttccc 40720365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 37828459 - 37828497
Alignment:
Q  315 ggtttcttaacttatgccccaagggcacaagttaacatt 353  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  37828459 ggtttcttaacatatgccccaagggcacaagttagcatt 37828497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 5505643 - 5505602
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacat 352  Q
    ||||| |||||||||||||||  |||||||||||||||||||    
T  5505643 atttgatttcttaacttatgcttcaagggcacaagttaacat 5505602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 41888943 - 41888980
Alignment:
Q  329 tgccccaagggcacaagttaacatttccctcattttat 366  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41888943 tgccctaagggcacaagttaacatttcccttattttat 41888980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 18700065 - 18700101
Alignment:
Q  316 gtttcttaacttatgccccaagggcacaagttaacat 352  Q
    |||||||||||| |||||| |||||||||||||||||    
T  18700065 gtttcttaacttgtgcccctagggcacaagttaacat 18700101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 24393660 - 24393632
Alignment:
Q  172 tatgggtcatgttaacttgtgcccttagg 200  Q
    |||||||||||||||||||||||||||||    
T  24393660 tatgggtcatgttaacttgtgcccttagg 24393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 30961666 - 30961706
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaaca 351  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  30961666 atttgttttcttaacttatgcctcaaggacacaagttaaca 30961706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 11991528 - 11991607
Alignment:
Q  278 attgaatgcacaatttccaagaannnnnnncacatttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||||||||||||||||||| ||        |||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  11991528 attgaatgcacaatttccaaaaaaaattactacatttggcttcttaatttatgccccaaggacacaagttaacatttccc 11991607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 40113066 - 40113106
Alignment:
Q  318 ttcttaacttatgccccaagggcacaagttaacatttccct 358  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  40113066 ttcttaacttatgctccaagggcacaagttaacatttccct 40113106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 523671 - 523618
Alignment:
Q  311 atttggtttcttaacttatgccccaagggcacaagttaacatttccctcatttt 364  Q
    |||||| |||| ||||| ||||  |||||||||||||||||||||||| |||||    
T  523671 atttggcttctaaacttgtgccttaagggcacaagttaacatttcccttatttt 523618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 28735399 - 28735446
Alignment:
Q  309 acatttggtttcttaacttatgccccaagggcacaagttaacatttccc 357  Q
    |||||||  |||||||||||| ||| |||||||||||||||||||||||    
T  28735399 acatttgtcttcttaacttataccc-aagggcacaagttaacatttccc 28735446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 45935 - 45977
Alignment:
Q  312 tttggtttcttaacttatgccccaagggcacaagttaacattt 354  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  45935 tttggttccttaacttatgccccaagggcacaggttaacattt 45977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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