View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_12 (Length: 462)
Name: NF7962_low_12
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 83 - 442
Target Start/End: Original strand, 30336989 - 30337346
Alignment:
| Q |
83 |
actatcattgtaaagatcttggaacatatgattgtcatataacaagacactaaataacatacattcctaaaatt-agaaagnnnnnnnnnnctaaatagc |
181 |
Q |
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| T |
30336989 |
actaacattgtaaagatcttggaacatatgattgtcatataataagacactaaataacatacattcctaaaatttaaaaaaaaaaaaaaaaccaaatagc |
30337088 |
T |
|
| Q |
182 |
atacattcatccatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattctttgtcatgaccttttcctgacaa |
281 |
Q |
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| T |
30337089 |
atacattcatctatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattctttgtcatgaccttttcttgacaa |
30337188 |
T |
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| Q |
282 |
ctactatatggtagcaannnnnnnatggaagtgacagaacccttaaacattatttcgttaggaacttccgtcaagttgcatatatttatagaaaattgct |
381 |
Q |
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| T |
30337189 |
cta---tatggtagcaatttttttatggaagtgacagaacccttaaacattaattagttaggaacttccgtcaagttacatatatttatagaaaattgct |
30337285 |
T |
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| Q |
382 |
cacaccctttcatggatacttgcatcaatttacatgaacacttgcatactttcacacgagt |
442 |
Q |
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| T |
30337286 |
cacatcctttcatggatacttgcatcaatttacatgaacacttgcatcctttcacaggagt |
30337346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30336940 - 30337003
Alignment:
| Q |
1 |
atatcacatgtaagtattagttttcaaattgacgtttacattttagaagactatcattgtaaag |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
30336940 |
atatcacatgtaagtattagttttcaaattgacgtttacattttagaaaactaacattgtaaag |
30337003 |
T |
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