View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_13 (Length: 438)
Name: NF7962_low_13
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 4815784 - 4815366
Alignment:
| Q |
1 |
gtgataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagtcgagtctttattgt |
100 |
Q |
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| T |
4815784 |
gtgataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagtcgagtctttattgt |
4815685 |
T |
|
| Q |
101 |
agcttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcatctaggaacttatga |
200 |
Q |
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| T |
4815684 |
agcttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcatctaggaacttatga |
4815585 |
T |
|
| Q |
201 |
aattcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaatggagtgttagaca |
300 |
Q |
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| T |
4815584 |
aattcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaatggagtgttagaca |
4815485 |
T |
|
| Q |
301 |
ctaatatagagaagatgtagggttctagcatgtcttcagaaagagctggaagatgacactgtgtgaattccttctccggtcaattaactctatattcttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
4815484 |
ctaatatagagaagatgtagggttctagcatgtcttcagaaagagctggaagatgacac--tgtaaattccttctccggtcaattaactctatattcttg |
4815387 |
T |
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| Q |
401 |
agc--agttcagagaaccatg |
419 |
Q |
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| T |
4815386 |
agcagagttcagagaaccatg |
4815366 |
T |
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