View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_14 (Length: 429)
Name: NF7962_low_14
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 27797914 - 27797508
Alignment:
| Q |
1 |
tcaaaggatctatataaatatttagttgcgttttcaatttaaggttgtgcaactttaactaaaagaagaccaataaatacaaatgtgaaaggttttatag |
100 |
Q |
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| T |
27797914 |
tcaaaggatctatataaatatttagttgcgttttcaatttaaggtggtgcaactttaactaaaagaagaccaataaatacaaatgggaaaggtttcatag |
27797815 |
T |
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| Q |
101 |
aactgggtttttgtttgatgtgttgaaaggagtggagatggtttgaattatggtttgaggagaaaattatatatagctgctaccaaaggaatggaagagt |
200 |
Q |
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| T |
27797814 |
aactgggtttttggttgatgtgttgaaaggagtggagatggtttga----tggtttgaggagaaaattatatattgctgctaccaaaggaatggaagagt |
27797719 |
T |
|
| Q |
201 |
ataaaaaatatgaattggatgggaaggaattatatataaggccagtagttacatgcttcaacaaagagtatgttggatatgcttcaaaatctaatgtgaa |
300 |
Q |
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| T |
27797718 |
ataaaaaatatgaattggatgggaaggaattatatataaggccagtagttacatgcttcaacaaagagtatgttggatatgcttcaaaatctaatgtgaa |
27797619 |
T |
|
| Q |
301 |
tgtgaaagtgttccagttcttcctatctcgcgacactgaggaaagatttgcgacgtgcagctcgaaggattgcaaggagtccaattacggtttatctcgc |
400 |
Q |
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| T |
27797618 |
tgtgaaagtgttccggttcttcctatcttgcgacactgaggaaagattt--gacgtgcagctcgaaggatcgcaaggagtccaattacggcttatctcgc |
27797521 |
T |
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| Q |
401 |
aacatggaaaagg |
413 |
Q |
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| T |
27797520 |
aacatggaaaagg |
27797508 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 53665832 - 53665884
Alignment:
| Q |
294 |
atgtgaatgtgaaagtgttccagttcttcctatctcgcgacactgaggaaaga |
346 |
Q |
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| T |
53665832 |
atgtgactgtgaaagtgttccagttctgcctatctcgcggcgcagaggaaaga |
53665884 |
T |
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