View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7962_low_18 (Length: 385)
Name: NF7962_low_18
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_18 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 26085039 - 26084668
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
26085039 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatcgcagttaaacga |
26084940 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084939 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
26084840 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084839 |
ccttagacgatgagattgcaaaattttgtgaatctaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
26084740 |
T |
|
| Q |
301 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084739 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
26084668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 26120601 - 26120230
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
26120601 |
tggtactgtcaaggcattaagaaccaatcctattgttgctcctgatgaatccgtgaacccgagattggcaaatttattagagaaaatcgcagttaaacga |
26120502 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26120501 |
gagatcatagttacccttgcaaactcaaatgtgaaagagatcctcgagatctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
26120402 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
26120401 |
ccttagacgatgagattgcaaagttttgtgaatcgaatcaagtcccattttacaaaagagacccggataatggtattgatactgttggaaaaattccaaa |
26120302 |
T |
|
| Q |
301 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
372 |
Q |
| |
|
||| | |||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26120301 |
cggcgaggctgtctccagtctcaaattccgtattctaagagaatttttgcagttgggatacagtgttcttct |
26120230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 26097314 - 26096943
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||| ||||||||||||| || ||||||||| |
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|
| T |
26097314 |
tggtactgtcaaggcaataagaaccagtcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatattagagaaaatcgcagttaaacga |
26097215 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26097214 |
gagattatagttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
26097115 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| || |
|
|
| T |
26097114 |
ccttagacgatgagattgcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggtcaa |
26097015 |
T |
|
| Q |
301 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
372 |
Q |
| |
|
||| | |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26097014 |
cggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttcttct |
26096943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 26065314 - 26064943
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| || ||||||| | |
|
|
| T |
26065314 |
tggtactgtcaaggcattaagaaccaatcctaatgttgctcctgatgaatccgtgaacccgagattggcaaatatattagataaaatcgcagttaaacaa |
26065215 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| || || || ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26065214 |
gagatcatagttgcccttgcaaactccaatgttaaggagatcctggaagtctggttcactaatatcaagagagttggtatatctaattatctagttgttg |
26065115 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
26065114 |
ccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccattttacaaaagagacccggataatggtattgatgctgttggaaaaagaggaaa |
26065015 |
T |
|
| Q |
301 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
372 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
26065014 |
gagaacggctgtctccgggcttaaatttcgtattctaagggaatttttgcagctgggatatagcgttcttct |
26064943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 26127258 - 26126887
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| || || || ||| |
|
|
| T |
26127258 |
tggtactgtcaaggcattaagaaccaatcctaatgttgctcctgatgaatccgtgaacccgagattggcaaatttattagagaaaattgcagtaaaccga |
26127159 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
26127158 |
gagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatcaagagagtcggtatacctaattatttagttgttg |
26127059 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
|||||||| |||| ||| |||| |||||||||| ||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
26127058 |
ccttagacgatgaaatttcaaagttttgtgaatcaaataaagtcccgttttacaaaagagacccggatgatgctattgatactgttggaaaaataggagg |
26126959 |
T |
|
| Q |
301 |
cggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttcttct |
372 |
Q |
| |
|
| | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26126958 |
gagagcggctgtctctgggcttaaatttcgtattttaagagaatttttgcagttgggatatagcgttcttct |
26126887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 26036666 - 26036298
Alignment:
| Q |
1 |
tggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatagcggttaaacga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||| || ||||||||||| |||| |||||||| | ||||||||| |
|
|
| T |
26036666 |
tggtactgtcaagggattaagaaccaatcctactgttgttcctgatgaatccgtgaatccaagattggcaaagatattggagaaaatctcagttaaacga |
26036567 |
T |
|
| Q |
101 |
gagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttg |
200 |
Q |
| |
|
||||||||||| | |||||||| || |||||||||| ||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26036566 |
gagatcatagtagcacttgcaaattccaatgtgaaggagatgttagaggtctggttctcaaatatcaagagagttggtatatctaattatctagttgttg |
26036467 |
T |
|
| Q |
201 |
ccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaa |
300 |
Q |
| |
|
| |||||| |||||||| |||||||||||||| ||| |||||||||||||| |||||||||| ||| ||| |||||| || |||||||| ||| |
|
|
| T |
26036466 |
ctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcccattttacaaaagagacccagatgatggtattgacaccattggaaaa----caa- |
26036372 |
T |
|
| Q |
301 |
cggtggg------gctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttct |
369 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26036371 |
-ggagggaaccatgctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatggtgttct |
26036298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
147 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
207 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
|
|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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