View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_low_19 (Length: 382)

Name: NF7962_low_19
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_low_19
NF7962_low_19
[»] chr7 (10 HSPs)
chr7 (74-157)||(4855782-4855865)
chr7 (34-157)||(19646786-19646908)
chr7 (35-152)||(31326799-31326915)
chr7 (34-157)||(3601146-3601268)
chr7 (34-159)||(2891965-2892090)
chr7 (325-376)||(4855553-4855603)
chr7 (104-150)||(36312263-36312309)
chr7 (104-149)||(1852055-1852100)
chr7 (117-150)||(44862939-44862972)
chr7 (34-146)||(26188356-26188467)
[»] chr4 (8 HSPs)
chr4 (34-148)||(56083955-56084068)
chr4 (35-152)||(20516508-20516624)
chr4 (34-151)||(49604339-49604455)
chr4 (36-148)||(34953746-34953857)
chr4 (34-149)||(39807459-39807573)
chr4 (104-150)||(31093016-31093062)
chr4 (104-150)||(43842059-43842105)
chr4 (104-150)||(45461406-45461452)
[»] chr1 (9 HSPs)
chr1 (34-152)||(35990105-35990223)
chr1 (34-125)||(7134388-7134478)
chr1 (34-157)||(34549696-34549818)
chr1 (34-157)||(41933646-41933768)
chr1 (104-150)||(14587525-14587571)
chr1 (104-150)||(33801272-33801318)
chr1 (104-150)||(41723438-41723484)
chr1 (104-150)||(44496395-44496441)
chr1 (104-150)||(44757713-44757759)
[»] chr5 (11 HSPs)
chr5 (34-157)||(28442944-28443066)
chr5 (40-159)||(32694875-32694993)
chr5 (104-150)||(13822254-13822300)
chr5 (104-150)||(37012734-37012780)
chr5 (104-159)||(23252385-23252440)
chr5 (104-150)||(8300944-8300990)
chr5 (104-150)||(12723581-12723627)
chr5 (104-150)||(12785064-12785110)
chr5 (104-150)||(27114214-27114260)
chr5 (36-138)||(27495004-27495105)
chr5 (48-157)||(27690608-27690716)
[»] chr3 (13 HSPs)
chr3 (35-152)||(43418863-43418979)
chr3 (42-157)||(25214709-25214823)
chr3 (47-144)||(29582089-29582185)
chr3 (53-149)||(10494899-10494994)
chr3 (89-159)||(20860532-20860601)
chr3 (104-159)||(42899127-42899182)
chr3 (104-150)||(149236-149282)
chr3 (104-150)||(10509403-10509449)
chr3 (104-150)||(26502373-26502419)
chr3 (104-150)||(39586483-39586529)
chr3 (104-148)||(41174729-41174773)
chr3 (53-149)||(45405824-45405919)
chr3 (49-149)||(53393802-53393901)
[»] chr2 (11 HSPs)
chr2 (36-157)||(33945772-33945892)
chr2 (41-157)||(21649843-21649958)
chr2 (33-131)||(815414-815511)
chr2 (104-150)||(44760002-44760048)
chr2 (104-157)||(24168416-24168469)
chr2 (105-157)||(37128068-37128120)
chr2 (34-149)||(21485439-21485553)
chr2 (104-150)||(6404025-6404071)
chr2 (104-150)||(15911693-15911739)
chr2 (104-150)||(17308863-17308909)
chr2 (49-149)||(18963200-18963299)
[»] scaffold0054 (1 HSPs)
scaffold0054 (34-146)||(19207-19318)
[»] chr8 (10 HSPs)
chr8 (34-138)||(32124654-32124757)
chr8 (34-149)||(21269172-21269286)
chr8 (104-150)||(35684197-35684243)
chr8 (34-147)||(11456858-11456970)
chr8 (119-150)||(11076153-11076184)
chr8 (120-150)||(8240169-8240199)
chr8 (33-131)||(17865261-17865358)
chr8 (104-150)||(32946989-32947035)
chr8 (104-150)||(39260474-39260520)
chr8 (104-150)||(40105430-40105476)
[»] scaffold0001 (1 HSPs)
scaffold0001 (34-157)||(427357-427479)
[»] chr6 (4 HSPs)
chr6 (104-150)||(303664-303710)
chr6 (104-150)||(16395225-16395271)
chr6 (104-150)||(31271259-31271305)
chr6 (89-146)||(20818429-20818484)
[»] scaffold0048 (1 HSPs)
scaffold0048 (34-159)||(51683-51807)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 4855865 - 4855782
Alignment:
Q  74 cgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacaccataagcact 157  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  4855865 cgttgtaaaattcacgcataaactgcaaaggcaattgcagagactctatgaacggtcaacaatgattatgacaccataagcact 4855782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 19646786 - 19646908
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||| | ||| ||||||||| |||||  |||||||| || || || ||||||| |||||||| ||||||||||| || |||||||| |||||    
T  19646786 attttttgtgtttttttttatgtcaaaggtctttattgaccgttatataactctcgcataagctgcaaag-caattgcagaggttatatgaacgatcaac 19646884  T
Q  134 aatgatcatgacaccataagcact 157  Q
    ||||| |||||||||| |||||||    
T  19646885 aatgaccatgacaccacaagcact 19646908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 31326915 - 31326799
Alignment:
Q  35 ttttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaaca 134  Q
    |||||| |||| | ||||||||||||| ||| |  ||||| | ||| ||| | | ||||| |||||||| |||||| || |||| |||||||||||||||    
T  31326915 ttttttatgttttctttgatgtcaaaggtctctattgaccatcgtataatcctcacataagctgcaaag-caattgtagggattatatgaacggtcaaca 31326817  T
Q  135 atgatcatgacaccataa 152  Q
    ||||||||||||||||||    
T  31326816 atgatcatgacaccataa 31326799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 3601268 - 3601146
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| ||||||||| ||||| | | || ||| ||| ||| |||   ||||||| |||||||| |||||||| ||||| |||||||||||| |    
T  3601268 atttttagtgttttatttgatgacaaaggtttctgttgatcgtcgtataatctccgcataagctgcaaag-caattgcaaagattatatgaacggtcatc 3601170  T
Q  134 aatgatcatgacaccataagcact 157  Q
    ||||| ||||||||||||| ||||    
T  3601169 aatgaccatgacaccataaacact 3601146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 2891965 - 2892090
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacg-gtcaa 132  Q
    ||||||| ||||||||||||| |||||| ||| || || || | ||| ||||| |||||||||||||||  ||||||||   |||||||||||| ||||     
T  2891965 attttttatgttgtatttgatctcaaaggtctctgttggccatcgtataattcccgcataaactgcaaa-acaattgcaagaattctatgaacgtgtcag 2892063  T
Q  133 caatgatcatgacaccataagcacttc 159  Q
    |||||| ||||||||| ||| ||||||    
T  2892064 caatgaccatgacaccgtaaacacttc 2892090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 4855603 - 4855553
Alignment:
Q  325 tgatatatttgcaggggagtatggtatactttgttgattggttctctgctac 376  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||    
T  4855603 tgatatatttgcaagggagtatggt-tacttggttgattggttctttgctac 4855553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 36312309 - 36312263
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  36312309 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 36312263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 1852055 - 1852100
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacacca 149  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||    
T  1852055 gcaattgcaggggttatatgaacggtcaacaatgaccatgacacca 1852100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 44862939 - 44862972
Alignment:
Q  117 ttctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||||||||||||||| |||||||||||    
T  44862939 ttctatgaacggtcaacaatgaccatgacaccat 44862972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 26188467 - 26188356
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| | |||||||| |||| ||| || |||||||| || ||  | ||||||| |||||||| |||||| || | || ||||||||||||||    
T  26188467 atttttggtgttttctttgatgttaaaggtctctgttgaccgttatataacccccgcataagctgcaaag-caattgtaggggttatatgaacggtcaac 26188369  T
Q  134 aatgatcatgaca 146  Q
     |||| |||||||    
T  26188368 tatgaccatgaca 26188356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 56083955 - 56084068
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||| ||  | ||||||| ||||||| |||||||||| |||| ||||||||||| ||    
T  56083955 attttttgtgttgtatttgatgtcaaaggtctttgttgaccgtcgtagaaaccccgcataagctgcaaa-gcaattgcagggattttatgaacggtcgac 56084053  T
Q  134 aatgatcatgacacc 148  Q
    ||||| |||||||||    
T  56084054 aatgaccatgacacc 56084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 20516508 - 20516624
Alignment:
Q  35 ttttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaaca 134  Q
    |||||| |||| ||||||||||||| | ||| |||||||||| ||| ||| |  |||||| |||||||| |||||||| ||||| |||||||||||||||    
T  20516508 ttttttttgttttatttgatgtcaagggtctctgctgaccgtcgtataatccctgcataagctgcaaag-caattgcatagattatatgaacggtcaaca 20516606  T
Q  135 atgatcatgacaccataa 152  Q
    |||| |||||||||||||    
T  20516607 atgaccatgacaccataa 20516624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 49604339 - 49604455
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||| | ||||||||||||| ||| || ||||| | ||||||| |  |||||| |||||||| || ||||||||||| ||||||| ||||||    
T  49604339 attttttgtgttttctttgatgtcaaaggtctctgttgaccatcgtaaaatccttgcataagctgcaaag-cagttgcagagattgtatgaacagtcaac 49604437  T
Q  134 aatgatcatgacaccata 151  Q
    ||||| ||||||||||||    
T  49604438 aatgaccatgacaccata 49604455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 34953857 - 34953746
Alignment:
Q  36 tttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaa 135  Q
    |||||||||| | ||||||||||||  ||| |||||||||| ||| ||| | ||||||| ||||| || ||||||||| |||| ||||||||||||||||    
T  34953857 tttttgtgttttctttgatgtcaaaagtctatgctgaccgtcgtataatccccgcataagctgcagag-caattgcagggattatatgaacggtcaacaa 34953759  T
Q  136 tgatcatgacacc 148  Q
    ||| |||||||||    
T  34953758 tgaccatgacacc 34953746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 39807573 - 39807459
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| | ||||||||||||| ||| || ||||| || || ||  |  |||||| |||||||| ||||||||| | || ||||||||||||||    
T  39807573 atttttggtgttttctttgatgtcaaaggtctctgttgaccattatataacccttgcataagctgcaaag-caattgcaggggttatatgaacggtcaac 39807475  T
Q  134 aatgatcatgacacca 149  Q
    ||||||||||||||||    
T  39807474 aatgatcatgacacca 39807459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 31093016 - 31093062
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  31093016 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 31093062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 43842105 - 43842059
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  43842105 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 43842059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 45461406 - 45461452
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  45461406 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 45461452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 35990223 - 35990105
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    ||||||| |||||||||||||||||||| | | || ||| ||||||| ||| | |||||||||||||||  |||||||| ||||||||||||||||||||    
T  35990223 attttttctgttgtatttgatgtcaaaggtatgtgttgatcgttgtagaatcctcgcataaactgcaaaaacaattgcaaagattctatgaacggtcaac 35990124  T
Q  134 aatgatcatgacaccataa 152  Q
    | ||| ||||||| |||||    
T  35990123 agtgaccatgacatcataa 35990105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 7134388 - 7134478
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaa 125  Q
    ||||||||||||||||||||||| |||| ||| |||||||||| ||||||| | || ||||| ||||||  |||||||||||||||||||||    
T  7134388 attttttgtgttgtatttgatgttaaaggtctctgctgaccgtcgtaaaatccccgtataaattgcaaa-acaattgcagagattctatgaa 7134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 34549696 - 34549818
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||| ||||||||||||||| ||| | |||||||| ||| ||| | ||||||| |||||||  ||||||||| |||| | || ||||||| |    
T  34549696 attttttgtgttttatttgatgtcaaaggtctctactgaccgtcgtataatcctcgcataagctgcaaa-tcaattgcagggattatttggacggtcagc 34549794  T
Q  134 aatgatcatgacaccataagcact 157  Q
    |||| |||||||||||||| ||||    
T  34549795 aatggtcatgacaccataaacact 34549818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 41933768 - 41933646
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||||||||| ||||| ||| | |||| ||||| |  || ||| ||| |||||||||||||  ||||||||  ||||||||||||||||| |    
T  41933768 attttttgtgttgtatttaatgtccaaggtttttgttgaccatcatagaatccacacataaactgcaaaa-caattgcaaggattctatgaacggtcatc 41933670  T
Q  134 aatgatcatgacaccataagcact 157  Q
    ||||| ||||||||||||| ||||    
T  41933669 aatgaccatgacaccataaacact 41933646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 14587571 - 14587525
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    ||||||| || | |||||||||||| |||||||||||||||||||||    
T  14587571 gcaattgtagggtttctatgaacggccaacaatgatcatgacaccat 14587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 33801272 - 33801318
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  33801272 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 33801318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 41723438 - 41723484
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  41723438 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 41723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 44496395 - 44496441
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  44496395 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 44496441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 44757759 - 44757713
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  44757759 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 44757713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 28442944 - 28443066
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||||||||||| ||||||||| ||| || ||| ||| ||| ||| | ||||||| | |||||| |||||| |  |||||||||||||||||||    
T  28442944 attttttgtgttgtatttaatgtcaaaggtctctgttgatcgtcgtagaatccccgcataagcggcaaag-caattgtaaggattctatgaacggtcaac 28443042  T
Q  134 aatgatcatgacaccataagcact 157  Q
    ||||||||||||||| ||| ||||    
T  28443043 aatgatcatgacaccctaaacact 28443066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 32694875 - 32694993
Alignment:
Q  40 tgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgat 139  Q
    |||||||||||||||||||||| ||| ||||||  || ||| ||| |  ||||||||||||||  ||||| ||  |||||||||||||  || ||||||     
T  32694875 tgtgttgtatttgatgtcaaaggtctatgctgattgtcgtagaatccctgcataaactgcaaa-acaattacatggattctatgaacgcgcagcaatgac 32694973  T
Q  140 catgacaccataagcacttc 159  Q
    |||| |||||||| ||||||    
T  32694974 catggcaccataaacacttc 32694993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 13822300 - 13822254
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||    
T  13822300 gcaattgcagggtttctatgaacggtcaacaatgaccatgacaccat 13822254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 37012734 - 37012780
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||    
T  37012734 gcaattgcagggtttctatgaacggtcaacaatgaccatgacaccat 37012780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 23252385 - 23252440
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccataagcacttc 159  Q
    |||||||||| | || ||||||||||||||||||| |||||||||| || ||||||    
T  23252385 gcaattgcaggggttatatgaacggtcaacaatgaccatgacaccacaaacacttc 23252440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 8300990 - 8300944
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  8300990 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 8300944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 12723581 - 12723627
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  12723581 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 12723627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 12785064 - 12785110
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  12785064 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 12785110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 27114214 - 27114260
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  27114214 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 27114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 27495004 - 27495105
Alignment:
Q  36 tttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaa 135  Q
    |||||||||| | ||||||||||||| ||| || |||||||| || ||  | ||||||| ||||||| ||||||||||   || ||||||||| ||||||    
T  27495004 tttttgtgttttttttgatgtcaaaggtctctgttgaccgttatataaccctcgcataagctgcaaa-gcaattgcaggtgttatatgaacggacaacaa 27495102  T
Q  136 tga 138  Q
    |||    
T  27495103 tga 27495105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 27690716 - 27690608
Alignment:
Q  48 atttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacac 147  Q
    ||||||||||||| ||||||| | ||||| ||| |||   ||||||||||| ||||  | |||||  ||||||||||| ||||| |||||| ||| ||||    
T  27690716 atttgatgtcaaaaatctttgtttaccgtcgtagaatcttcgcataaactgtaaagt-atttgcatggattctatgaatggtcaccaatgaccataacac 27690618  T
Q  148 cataagcact 157  Q
    ||||| ||||    
T  27690617 cataaacact 27690608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 43418863 - 43418979
Alignment:
Q  35 ttttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaaca 134  Q
    |||||| |||||||||||||||||||| ||| |||||||||| ||||||| | | |||||||||||||  ||||||||| ||||||||||| | ||| ||    
T  43418863 ttttttttgttgtatttgatgtcaaaggtctctgctgaccgtcgtaaaatcctcacataaactgcaaa-acaattgcagggattctatgaatgatcacca 43418961  T
Q  135 atgatcatgacaccataa 152  Q
    || | ||||| |||||||    
T  43418962 ataaccatgataccataa 43418979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 25214823 - 25214709
Alignment:
Q  42 tgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatca 141  Q
    |||||||||||||||||||| |||  ||| ||||| ||| ||| | ||||||| |||||||| ||||||||  ||||||||||||||||||||||| | |    
T  25214823 tgttgtatttgatgtcaaaggtctcggctaaccgtcgtagaatccccgcataagctgcaaag-caattgcaaggattctatgaacggtcaacaatggtta 25214725  T
Q  142 tgacaccataagcact 157  Q
    ||| ||||||| ||||    
T  25214724 tgataccataaacact 25214709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 29582089 - 29582185
Alignment:
Q  47 tatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatga 144  Q
    |||||||| |||||| |||||||||||||| ||| ||||   ||||||||| |||| |||||||||| |||| ||||| |||||| |||||| |||||    
T  29582089 tatttgatatcaaaggtctttgctgaccgtcgtacaatttcagcataaactacaaa-gcaattgcagggattgtatgagcggtcagcaatgaccatga 29582185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 10494994 - 10494899
Alignment:
Q  53 atgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacacca 149  Q
    ||||||||| |||||| |||||||| || ||  | ||||||| ||||| || ||||||||| | || ||||||||||||||||||| ||||||||||    
T  10494994 atgtcaaaggtctttgttgaccgttatataacccccgcataagctgcagag-caattgcaggggttatatgaacggtcaacaatgaccatgacacca 10494899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 20860601 - 20860532
Alignment:
Q  89 gcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacaccataagcacttc 159  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||| |||||| ||| ||| ||||||||||||    
T  20860601 gcataaactgcaaag-caattgcaaggattctatgaatggtcagcaatgaccataacatcataagcacttc 20860532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 42899127 - 42899182
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccataagcacttc 159  Q
    |||||| ||| |||| |||| |||||||||||||| ||||||||||||| ||||||    
T  42899127 gcaatttcagggattatatgtacggtcaacaatgaccatgacaccataaacacttc 42899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 149236 - 149282
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  149236 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 149282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 10509449 - 10509403
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  10509449 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 10509403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 26502419 - 26502373
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  26502419 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 26502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 39586483 - 39586529
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  39586483 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 39586529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 41174729 - 41174773
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacacc 148  Q
    |||||||||| | | |||||||||||||||||||| |||||||||    
T  41174729 gcaattgcagggttcctatgaacggtcaacaatgaccatgacacc 41174773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 45405919 - 45405824
Alignment:
Q  53 atgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacacca 149  Q
    ||||||| |||||||| |||||||| || ||  | | ||||| |||||| | ||||||||| | |  |||||||||||||||||||| |||||||||    
T  45405919 atgtcaaggatctttgttgaccgttatacaacccccacataagctgcaatg-caattgcagtggtcgtatgaacggtcaacaatgattatgacacca 45405824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 53393802 - 53393901
Alignment:
Q  49 tttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacacc 148  Q
    ||||||||||| | ||| |  |||||||| || ||||| ||||||| |||||| | ||||||||  | |  ||||||||||||||||||| |||||||||    
T  53393802 tttgatgtcaagggtctctcttgaccgttatataattcccgcataagctgcaatg-caattgcatgggtcgtatgaacggtcaacaatgaccatgacacc 53393900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 33945772 - 33945892
Alignment:
Q  36 tttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaa 135  Q
    |||| ||||||||||||||||||||| | | |||||||||| ||| ||| | ||||||| ||||||| |||||| ||| |||| ||  |||||||| |||    
T  33945772 ttttagtgttgtatttgatgtcaaaggtatctgctgaccgtcgtagaatccccgcataagctgcaaa-gcaattacagggattatacaaacggtcagcaa 33945870  T
Q  136 tgatcatgacaccataagcact 157  Q
    ||| ||||||||||||| ||||    
T  33945871 tgaccatgacaccataaacact 33945892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 21649958 - 21649843
Alignment:
Q  41 gtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatc 140  Q
    ||||||||||||||||||||| ||||||||||   | ||| ||| | ||||||| ||  |||| ||| |||||||||| ||||||||||||||||||| |    
T  21649958 gtgttgtatttgatgtcaaaggtctttgctgaatatcgtataatccccgcataagctataaag-caactgcagagattatatgaacggtcaacaatgacc 21649860  T
Q  141 atgacaccataagcact 157  Q
    | || ||||||| ||||    
T  21649859 aagataccataaacact 21649843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 815414 - 815511
Alignment:
Q  33 tattttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtca 131  Q
    |||||| |||||||||||||||||||||| ||| ||| |||||| ||| ||| | | ||||||||||||| | |||||||| || ||||||||| ||||    
T  815414 tattttatgtgttgtatttgatgtcaaaggtctctgcagaccgtcgtagaatccccacataaactgcaaa-gtaattgcagggaatctatgaacagtca 815511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 44760002 - 44760048
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||    
T  44760002 gcaattgcagggctcctatgaacggtcaacaatgatcatgacaccat 44760048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 24168416 - 24168469
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccataagcact 157  Q
    |||||||||||| |  ||||||||||||||||||| |||||||||| |||||||    
T  24168416 gcaattgcagaggtcgtatgaacggtcaacaatgaccatgacaccacaagcact 24168469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 37128120 - 37128068
Alignment:
Q  105 caattgcagagattctatgaacggtcaacaatgatcatgacaccataagcact 157  Q
    ||||||||| |||| |||||| |||||||||||| ||||||||||||| ||||    
T  37128120 caattgcagcgattatatgaatggtcaacaatgaccatgacaccataaacact 37128068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 21485553 - 21485439
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| | ||||||||||||| ||| |  || ||||| || ||  | ||||||| |||||||| ||||||||| | || |||||| |||||||    
T  21485553 atttttggtgttttctttgatgtcaaaggtctctattggccgttatataacccccgcataagctgcaaag-caattgcaggggttatatgaatggtcaac 21485455  T
Q  134 aatgatcatgacacca 149  Q
    ||||| ||||||||||    
T  21485454 aatgaccatgacacca 21485439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 6404025 - 6404071
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  6404025 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 6404071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 15911693 - 15911739
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  15911693 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 15911739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 17308863 - 17308909
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  17308863 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 17308909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 18963200 - 18963299
Alignment:
Q  49 tttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgacacc 148  Q
    ||||||||||| | ||| || |||||||| || ||| | | ||||| |||||| | ||||||||| | || |||||| |||||||||||| |||||||||    
T  18963200 tttgatgtcaagggtctctgttgaccgttatataatcctcacataagctgcaatg-caattgcaggggttgtatgaatggtcaacaatgaccatgacacc 18963298  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 19318 - 19207
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| | ||||||||||||| |||||| |||||||| || || || ||||||| |||||||  ||||||||  | || ||||||||||||||    
T  19318 atttttggtgttttctttgatgtcaaaggtctttgttgaccgttatataactcccgcataagctgcaaa-ccaattgcaacggttatatgaacggtcaac 19220  T
Q  134 aatgatcatgaca 146  Q
    ||||| |||||||    
T  19219 aatgaccatgaca 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 32124757 - 32124654
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    ||||| ||||||  |||||||||||||| ||| |||||||||| ||| ||| | ||||| |  ||||||| ||||||||| ||||||||||||| |||||    
T  32124757 attttctgtgtttgatttgatgtcaaaggtctctgctgaccgtcgtagaatccccgcatgagttgcaaag-caattgcagggattctatgaacgatcaac 32124659  T
Q  134 aatga 138  Q
    |||||    
T  32124658 aatga 32124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 21269286 - 21269172
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    ||||| |||||| | |||||||||||| || | || |||||||| || ||  | ||||||| |||||||  ||||||||| | || ||||||||||||||    
T  21269286 attttatgtgttttctttgatgtcaaatatttctgttgaccgttatataacccccgcataagctgcaaat-caattgcaggggttatatgaacggtcaac 21269188  T
Q  134 aatgatcatgacacca 149  Q
    ||||| ||||||||||    
T  21269187 aatgaccatgacacca 21269172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 35684243 - 35684197
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||    
T  35684243 gcaattgcagagttcctatgaacggtcaacaatgaccatgacaccat 35684197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 11456858 - 11456970
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||| ||||| | ||||||||||||| ||| || |||||||| |  ||  | |||||||  ||||||| ||||||||  | || ||||||||||||||    
T  11456858 atttttggtgttttctttgatgtcaaaggtctctgttgaccgttatgtaaccctcgcataagttgcaaag-caattgcattggttatatgaacggtcaac 11456956  T
Q  134 aatgatcatgacac 147  Q
    ||||||||||||||    
T  11456957 aatgatcatgacac 11456970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 150
Target Start/End: Original strand, 11076153 - 11076184
Alignment:
Q  119 ctatgaacggtcaacaatgatcatgacaccat 150  Q
    ||||||||||||||||||||||||||||||||    
T  11076153 ctatgaacggtcaacaatgatcatgacaccat 11076184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 8240199 - 8240169
Alignment:
Q  120 tatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||||||||||||||||||||||||    
T  8240199 tatgaacggtcaacaatgatcatgacaccat 8240169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 17865358 - 17865261
Alignment:
Q  33 tattttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtca 131  Q
    ||||||||||||||||||||||||||||  ||| ||||||| |  ||| |||   | ||||||||||||| |||||||  | ||||||||||| |||||    
T  17865358 tattttttgtgttgtatttgatgtcaaatttctctgctgactgacgtagaatcgccacataaactgcaaa-gcaattgtcgggattctatgaatggtca 17865261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 32946989 - 32947035
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    ||||||| |||| | |||||||||||||||||||| |||||||||||    
T  32946989 gcaattggagagttcctatgaacggtcaacaatgaccatgacaccat 32947035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 39260520 - 39260474
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  39260520 gcaattgcagggttactatgaacggtcaacaatgaccatgacaccat 39260474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 40105476 - 40105430
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  40105476 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 40105430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 427479 - 427357
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    |||||||||| | | ||||||||||||  ||| || |||||||| || ||| | ||||||| |||||||| |||||||   |||| ||||||||||||||    
T  427479 attttttgtggtttctttgatgtcaaatgtctctgttgaccgttatataatccccgcataagctgcaaag-caattgccaggattatatgaacggtcaac 427381  T
Q  134 aatgatcatgacaccataagcact 157  Q
    |||||  ||||||| |||| ||||    
T  427380 aatgacgatgacacgataaacact 427357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 303664 - 303710
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||    
T  303664 gcaattgcagagttcctatgaacggtcaacaatgaccatgacaccat 303710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 16395225 - 16395271
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  16395225 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 16395271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 31271259 - 31271305
Alignment:
Q  104 gcaattgcagagattctatgaacggtcaacaatgatcatgacaccat 150  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||    
T  31271259 gcaattgcagggttcctatgaacggtcaacaatgaccatgacaccat 31271305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 20818429 - 20818484
Alignment:
Q  89 gcataaactgcaaaggcaattgcagagattctatgaacggtcaacaatgatcatgaca 146  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||||||| |||||||    
T  20818429 gcataaactgcaaag-caattgcagaggttatatgaa-ggtcaacaatgaccatgaca 20818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 51683 - 51807
Alignment:
Q  34 attttttgtgttgtatttgatgtcaaagatctttgctgaccgttgtaaaattcacgcataaactgcaaaggcaattgcagagattctatgaacggtcaac 133  Q
    ||||| |||||| | |||||| |||||  ||| || ||||||| ||| |||||  |||||| ||| |||| |||||| || |||| |||| | |||||||    
T  51683 attttgtgtgttttctttgatttcaaaagtctctgttgaccgtcgtataattccggcataagctgtaaag-caattgtagggattatatgtatggtcaac 51781  T
Q  134 aatgatcatgacaccataagcacttc 159  Q
    ||||| ||| ||||||||| ||||||    
T  51782 aatgaccataacaccataaacacttc 51807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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