View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_2 (Length: 758)
Name: NF7962_low_2
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 5 - 754
Target Start/End: Original strand, 4854830 - 4855578
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaagtttgatgcgaccc |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4854830 |
gatggaaatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggagaatagtaagtttgatgcgaccc |
4854929 |
T |
|
| Q |
105 |
aagaaagggaggaattaaagcataggttgaataaggagttacaattatcctaaaaaatgtaatccagattgatatgnnnnnnnnnnnnnnn-gttccgaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4854930 |
aagaaagggaggaattaaagcataggttgaataaggagttacaattatcctaaaaaatgtaatccagattgatatgaaaaaaaaaaaaaaaagttccgaa |
4855029 |
T |
|
| Q |
204 |
ataagaaactaagggtgtgatatgtttttaaatgttagtcaatctttttgcttaatctaatggtcaaatagaatagtacatgagaggtgcttaatcgagt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4855030 |
ataagaaactaagggtgtgatatgtttttaaatgttagtcaatctttttgcttaatctaatcgtcaaatagaatagtacatgagaggtgcttaatcgagt |
4855129 |
T |
|
| Q |
304 |
gctcgccctaagacactccttaaaaacatttaaaaacattttgacactttaaagagagaaatagataaagagaatgatgtgatatgttactgatgtgatg |
403 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
4855130 |
gctcgccctaagatactccttaaaaacatttaaaaatattttgacactttaaagaga--aatagataaagagaatgatgtgatatgttattgatgtgatg |
4855227 |
T |
|
| Q |
404 |
gaaaaatagagatgaaacnnnnnnntacaatgttgaattaatgtataaaagttagagtgttcaaataaaa-aagttgttagattaaataaactaatatga |
502 |
Q |
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| T |
4855228 |
gaaaaatagagatgaaa-aaaaatatactatgttgaattaatgtataaaagttagagtgttcaaataaaaaaagttgttagattaaataaactaatatga |
4855326 |
T |
|
| Q |
503 |
tctaacagaaatgatatttaaagaacaattttatgctagaaaatgaggaaaataaaagttgtaataaaattatttaagaatgattgtacaaatatcattt |
602 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
4855327 |
tctaacataaatgatatttaaagaacaattttatgttagaaaatgagaaaagtaaaagttataataaaattatttaagaatggttagacaaatatcattt |
4855426 |
T |
|
| Q |
603 |
tccataatctaaatagtcatgaccacactgaatctagtctcatcaaaattacattatttatctgtcctcttatcttctgcatcttagtcaagaagaacca |
702 |
Q |
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||||| || |||||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
4855427 |
tccatgatttaaatagtcatgaccacattagatctagtctcatcaaaattacattatttctgtgtcctcttatcttctgcatcttagtcaagaagaacca |
4855526 |
T |
|
| Q |
703 |
aaataccatactcttgggttgcgaaggtagcaaagaaccaatcaacaaagta |
754 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4855527 |
aaataccatactcttgggttgcgaaggtagcaaagaaccaatcaaccaagta |
4855578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 4713460 - 4713591
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaagtttgatgcgaccc |
104 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
4713460 |
gatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaagtttgatgcgacgc |
4713559 |
T |
|
| Q |
105 |
aagaaagggaggaattaaagc-ataggttgaata |
137 |
Q |
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| ||| ||||||| |||||| |||||||||||| |
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| T |
4713560 |
a--aaaaggaggaagtaaagcaataggttgaata |
4713591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 4698584 - 4698674
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaagtttg |
95 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||| |||||||| |||| ||| | |||| || |||| |||||||| |||||||| |
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| T |
4698584 |
gatggaaatcaacggatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaagtttg |
4698674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 4862611 - 4862524
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaagt |
92 |
Q |
| |
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|||||| ||||||| ||||| ||||||||||| |||||| |||||||| |||| ||| | |||| ||||||| ||| |||| ||||| |
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| T |
4862611 |
gatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaagt |
4862524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 4785229 - 4785315
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaag |
91 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||| || |||||| |||| ||| | || | ||||||| ||||||||||||| |
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| T |
4785229 |
gatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4785315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 4817658 - 4817744
Alignment:
| Q |
5 |
gatggacatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggaggatagtaag |
91 |
Q |
| |
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|||||| ||||||| ||||| |||||||||||||||| || |||||| |||| ||| | || | ||||||| ||||||||||||| |
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| T |
4817658 |
gatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4817744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 556 - 602
Target Start/End: Complemental strand, 42615909 - 42615863
Alignment:
| Q |
556 |
aaaagttgtaataaaattatttaagaatgattgtacaaatatcattt |
602 |
Q |
| |
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||||||||| | ||||||||| || |||||||||||||||||||||| |
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| T |
42615909 |
aaaagttgtcaaaaaattattaaaaaatgattgtacaaatatcattt |
42615863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 41675392 - 41675437
Alignment:
| Q |
557 |
aaagttgtaataaaattatttaagaatgattgtacaaatatcattt |
602 |
Q |
| |
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|||||||||| |||||||| || |||||||||||||||||||||| |
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| T |
41675392 |
aaagttgtaaaaaaattatcaaaaaatgattgtacaaatatcattt |
41675437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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