View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_low_20 (Length: 376)

Name: NF7962_low_20
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_low_20
NF7962_low_20
[»] chr3 (6 HSPs)
chr3 (148-357)||(35058153-35058362)
chr3 (1-138)||(35058405-35058540)
chr3 (145-257)||(3845193-3845304)
chr3 (30-96)||(14022065-14022131)
chr3 (28-80)||(5407008-5407060)
chr3 (160-257)||(38022330-38022424)
[»] chr4 (9 HSPs)
chr4 (148-257)||(2635056-2635164)
chr4 (28-92)||(48045677-48045741)
chr4 (203-257)||(33843584-33843637)
chr4 (28-98)||(33843801-33843871)
chr4 (183-262)||(29904120-29904198)
chr4 (148-193)||(33560655-33560700)
chr4 (287-327)||(1616523-1616563)
chr4 (303-331)||(5025588-5025616)
chr4 (185-257)||(49138956-49139027)
[»] chr5 (8 HSPs)
chr5 (30-96)||(18637375-18637441)
chr5 (221-261)||(2090182-2090222)
chr5 (28-94)||(34250279-34250345)
chr5 (148-246)||(10898626-10898723)
chr5 (148-193)||(29922582-29922627)
chr5 (221-257)||(22572557-22572593)
chr5 (148-220)||(34250435-34250507)
chr5 (203-259)||(38845650-38845705)
[»] chr7 (9 HSPs)
chr7 (148-249)||(27571763-27571863)
chr7 (30-96)||(45557457-45557523)
chr7 (28-96)||(33853409-33853477)
chr7 (46-93)||(12306818-12306865)
chr7 (155-193)||(12306933-12306971)
chr7 (32-98)||(15050383-15050449)
chr7 (28-96)||(29829294-29829362)
chr7 (185-253)||(38123769-38123836)
chr7 (32-96)||(40561687-40561751)
[»] chr2 (5 HSPs)
chr2 (162-255)||(33047650-33047742)
chr2 (276-327)||(12850727-12850778)
chr2 (262-316)||(22536146-22536200)
chr2 (34-96)||(30503299-30503361)
chr2 (46-98)||(43717415-43717467)
[»] scaffold0168 (1 HSPs)
scaffold0168 (155-257)||(31719-31820)
[»] chr6 (11 HSPs)
chr6 (156-257)||(1485238-1485339)
chr6 (30-97)||(34911034-34911100)
chr6 (28-80)||(19601377-19601429)
chr6 (28-96)||(28466909-28466977)
chr6 (28-96)||(34736756-34736824)
chr6 (155-257)||(5724721-5724822)
chr6 (155-220)||(579126-579191)
chr6 (35-80)||(34026417-34026462)
chr6 (32-96)||(882778-882842)
chr6 (155-191)||(2234305-2234341)
chr6 (279-327)||(16540241-16540289)
[»] chr8 (2 HSPs)
chr8 (28-96)||(2778605-2778673)
chr8 (289-331)||(41891804-41891846)
[»] chr1 (3 HSPs)
chr1 (27-71)||(28287257-28287301)
chr1 (159-220)||(24587838-24587899)
chr1 (267-327)||(40352493-40352553)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 148 - 357
Target Start/End: Complemental strand, 35058362 - 35058153
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaac 247  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058362 aattcttgaggcaaaatcaattctactcgagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaac 35058263  T
Q  248 caaacatacattaagcgtatgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgtagaattgattttagttccggactaaaaagggt 347  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  |||    
T  35058262 caaacatacattaagcgtatgtttggccgtgcggtgtggagaattaattttgatagaattgattttgtagaattgattttagttccggactaaaagtggt 35058163  T
Q  348 atgtgtttgg 357  Q
    ||||||||||    
T  35058162 atgtgtttgg 35058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35058540 - 35058405
Alignment:
Q  1 taagtttatgtatggttctacatccacaaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggatataaa 100  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  35058540 taagtgtatgtatggttc-acatccacaaaattgattttgagtggattgattctaactaaaagtgagttgaagataaagtgctttatgtttggatat-aa 35058443  T
Q  101 aagtgagctgaacaataatatttgagtgttaaaatcaa 138  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  35058442 aagtgagttgaacaataatatttgagtgttaaaatcaa 35058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 3845193 - 3845304
Alignment:
Q  145 ataaattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtga 244  Q
    ||||||||| |||||| |||||||||||||  ||| | | ||||||||| | || || ||||||| ||||||||| ||||||||||  ||||| |||||     
T  3845193 ataaattctagaggcagaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaat-caattttggttactccaaaagtgg 3845291  T
Q  245 aaccaaacataca 257  Q
    |||||||||||||    
T  3845292 aaccaaacataca 3845304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 14022131 - 14022065
Alignment:
Q  30 aattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    ||||||||||||||| ||| |||||| ||||||||||||||  ||||||||  ||| ||||||||||    
T  14022131 aattgattttgagtgaatttattctatctaaaagtgagttgcagataaagtaatttgtgtttggata 14022065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 5407060 - 5407008
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagt 80  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| | ||||||    
T  5407060 aaaattgattttgagtgaattgattctagctaaaattgagttgaaggtaaagt 5407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 38022424 - 38022330
Alignment:
Q  160 aaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacataca 257  Q
    |||||||||||||||   |||| ||||||||||  | || || |||||||  ||||||||| || |||||||| || |||||||||||||||||||||    
T  38022424 aaaatcaattctactt--gagcaatcaaacatgccaaaatcaattctacacttctagaatc-aactttggtccttctagaagtgaaaccaaacataca 38022330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 2635164 - 2635056
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaac 247  Q
    |||||| |||||||||||| ||||||| || ||| ||||||||||| | || || || ||||  ||||||||| |||||||||||||| | |||||||||    
T  2635164 aattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaattttacacttctagaatc-aattttggtccctctaaaagtgaaac 2635066  T
Q  248 caaacataca 257  Q
    ||||||||||    
T  2635065 caaacataca 2635056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 48045677 - 48045741
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttg 92  Q
    ||||||||||||||||  |||||||||  |||||| |||||||| ||||||||| ||||||||||    
T  48045677 aaaattgattttgagtaaattgattctggctaaaactgagttgaagataaagtgatttatgtttg 48045741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 33843637 - 33843584
Alignment:
Q  203 ttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacataca 257  Q
    ||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||    
T  33843637 ttctacacctctagaatc-aattttggaccctctagaagtgaaaccaaacataca 33843584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 33843871 - 33843801
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggatata 98  Q
    |||||||||||||| || |||||||||  ||||||||||||||    ||||||| ||||||||||||||||    
T  33843871 aaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatata 33843801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 29904198 - 29904120
Alignment:
Q  183 atcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacatacattaag 262  Q
    ||||||||||| |||| || || || |||||||||||| |||| |||  |||| ||||||||||||||||||||| ||||    
T  29904198 atcaaacatgttagaatcaattttatatctctagaatc-aattgtggatcctctagaagtgaaaccaaacatacactaag 29904120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 33560655 - 33560700
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgt 193  Q
    |||||| ||||||||||||||||||||| ||||| | |||||||||    
T  33560655 aattctagaggcaaaatcaattctactcgagagcaaccaaacatgt 33560700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 1616563 - 1616523
Alignment:
Q  287 agaattaaatttgttagaattgattttgtagaattgatttt 327  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  1616563 agaattgattttgatagaattgattttgtagaattgatttt 1616523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 5025616 - 5025588
Alignment:
Q  303 gaattgattttgtagaattgattttagtt 331  Q
    |||||||||||||||||||||||||||||    
T  5025616 gaattgattttgtagaattgattttagtt 5025588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 49138956 - 49139027
Alignment:
Q  185 caaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacataca 257  Q
    ||||||||| |||| || ||||||| |||||||||| |||||||| | ||  ||||||| |||||||||||||    
T  49138956 caaacatgtcagaatcaattctacacctctagaatc-aattttggccactttagaagtggaaccaaacataca 49139027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 18637441 - 18637375
Alignment:
Q  30 aattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    ||||||||||||||| |||||||||||||||||||||||||||  || |||| ||| ||||||||||    
T  18637441 aattgattttgagtgaattgattctaactaaaagtgagttgagagtacagtgatttgtgtttggata 18637375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 2090182 - 2090222
Alignment:
Q  221 caattttggtccctccagaagtgaaaccaaacatacattaa 261  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  2090182 caattttggtccctccagaagtgaaaccaaacaaacattaa 2090222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 34250279 - 34250345
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttgga 94  Q
    ||||||||||||||||| ||||||| | |||| || |||||||| | ||||||| ||||||||||||    
T  34250279 aaaattgattttgagtgaattgattttgactataattgagttgaagctaaagtgatttatgtttgga 34250345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 10898723 - 10898626
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaa 246  Q
    |||||| ||||||||||||||| ||||| ||||| | ||||||||| | ||  | ||| ||| ||||||||| |||||||| | |||||| ||||||||    
T  10898723 aattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaattaattcgacagctctagaat-caattttgattcctccaaaagtgaaa 10898626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 29922627 - 29922582
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgt 193  Q
    |||||||||||||||||||||||||||  ||| | |||||||||||    
T  29922627 aattcttgaggcaaaatcaattctactagagaacaatcaaacatgt 29922582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 22572557 - 22572593
Alignment:
Q  221 caattttggtccctccagaagtgaaaccaaacataca 257  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  22572557 caatttttgtccctctagaagtgaaaccaaacataca 22572593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 34250435 - 34250507
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatc 220  Q
    |||||| |||||| |||||||||||||| ||||  | ||||||||| | ||||| |||||||  |||||||||    
T  34250435 aattctagaggcataatcaattctactctagagaaaccaaacatgtcaaaaacaattctacacatctagaatc 34250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 38845650 - 38845705
Alignment:
Q  203 ttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacatacatt 259  Q
    ||||||| ||| |||||| |||||||||| ||| ||||||| |||||||||||||||    
T  38845650 ttctacacctccagaatc-aattttggtctctctagaagtggaaccaaacatacatt 38845705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 27571863 - 27571763
Alignment:
Q  148 aattcttgaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaac 247  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||||||  ||  || ||||||| |||| |||| ||| ||||||||||| |||||||||||    
T  27571863 aattcttgaggtaaaatcaattatactcgagagcaatcaaacatgtaggagtcaattctacacctcttgaat-caaatttggtccctctagaagtgaaac 27571765  T
Q  248 ca 249  Q
    ||    
T  27571764 ca 27571763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 45557523 - 45557457
Alignment:
Q  30 aattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||||||||||| || ||||||||| |||||||||||||||| | ||||||| ||| ||||||||||    
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggata 45557457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 33853409 - 33853477
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||||||||||| |||| |||||||||  |||| |||||||||| | ||||||| ||||||||||||||    
T  33853409 aaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggata 33853477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 12306865 - 12306818
Alignment:
Q  46 attgattctaactaaaagtgagttgaggataaagtgctttatgtttgg 93  Q
    |||||||||  ||||||||||||||| ||||||||| |||||||||||    
T  12306865 attgattctggctaaaagtgagttgaagataaagtgatttatgtttgg 12306818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 12306971 - 12306933
Alignment:
Q  155 gaggcaaaatcaattctactcaagagccatcaaacatgt 193  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  12306971 gaggcaaaatcaattctactcaagagcaaccaaacatgt 12306933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 15050449 - 15050383
Alignment:
Q  32 ttgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggatata 98  Q
    ||||||||||||  |||||||||| |||||| ||| || ||| ||||||  ||||||||||||||||    
T  15050449 ttgattttgagttaattgattctagctaaaaatgaatttagggtaaagtaatttatgtttggatata 15050383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 29829294 - 29829362
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||||||||| ||| || |||||||||  |||||| ||||||||   ||||||| ||||||||||||||    
T  29829294 aaaattgattctgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggata 29829362  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 38123769 - 38123836
Alignment:
Q  185 caaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaaca 253  Q
    ||||||||| | || || ||||||||||||||||| |||||||||  |||||| ||||| |||||||||    
T  38123769 caaacatgttaaaatcaattctacatctctagaat-caattttggctcctccaaaagtggaaccaaaca 38123836  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 40561687 - 40561751
Alignment:
Q  32 ttgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    ||||||||||||| ||||||||||   |||| ||||||||   ||||||| ||||||||||||||    
T  40561687 ttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggata 40561751  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 33047650 - 33047742
Alignment:
Q  162 aatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacata 255  Q
    ||||||||||||||   ||| |||||||||||||||| || ||||||| ||| | |||| |||||||||||||| ||||| |||||||||||||    
T  33047650 aatcaattctactcgtcagcaatcaaacatgtgagaatcaattctacacctccaaaatc-aattttggtccctctagaagcgaaaccaaacata 33047742  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 12850778 - 12850727
Alignment:
Q  276 gtgtggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 327  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||||||||||    
T  12850778 gtgtggtgtggagaattgattttaatagaattgattatgtagaattgatttt 12850727  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 22536200 - 22536146
Alignment:
Q  262 gcgtatgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgta 316  Q
    ||||||||||||  ||||||||||||||||| | |||| ||||||||||| ||||    
T  22536200 gcgtatgtttgggtgtgtggtgtggagaattgattttgatagaattgattatgta 22536146  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 30503361 - 30503299
Alignment:
Q  34 gattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    ||||||||||| ||||||||| ||||||||| |||||| | |||| || ||| ||||||||||    
T  30503361 gattttgagtgaattgattctgactaaaagttagttgaaggtaaactgatttttgtttggata 30503299  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 43717467 - 43717415
Alignment:
Q  46 attgattctaactaaaagtgagttgaggataaagtgctttatgtttggatata 98  Q
    |||||||||||||||| || ||| |||  ||||||| ||||||||||||||||    
T  43717467 attgattctaactaaatgttagtcgagtgtaaagtgatttatgtttggatata 43717415  T

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Target: scaffold0168 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 31820 - 31719
Alignment:
Q  155 gaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacat 254  Q
    |||||| |||||||| ||||| | | | | ||||||||| |||| || ||||||| |||||||||| |||||||||| ||| ||||||| ||||||||||    
T  31820 gaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatc-aattttggtcactctagaagtggaaccaaacat 31722  T
Q  255 aca 257  Q
    |||    
T  31721 aca 31719  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 1485238 - 1485339
Alignment:
Q  156 aggcaaaatcaattctactcaagagccatcaaacatgt-gagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacat 254  Q
    ||||||||| |||||||||||||||| | |||||||||  |||| || ||||||| ||||||||||| || |||  ||||| ||||||||||||||| ||    
T  1485238 aggcaaaattaattctactcaagagcaaacaaacatgtcaagaatcaattctacacctctagaatcc-atattgacccctctagaagtgaaaccaaatat 1485336  T
Q  255 aca 257  Q
    |||    
T  1485337 aca 1485339  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 34911100 - 34911034
Alignment:
Q  30 aattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggatat 97  Q
    ||||||||||||||| ||||||||  |||||||||||||||| | | ||||| |||||||||||||||    
T  34911100 aattgattttgagtgaattgattccgactaaaagtgagttgaaggt-aagtgatttatgtttggatat 34911034  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 19601377 - 19601429
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagt 80  Q
    |||||||||||||| || ||||||| ||||||| |||||||||| ||||||||    
T  19601377 aaaattgattttgattgaattgattttaactaatagtgagttgaagataaagt 19601429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 28466909 - 28466977
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||| |||||||||||| |||||||||  |||||| |||||||| | || |||| ||||||||||||||    
T  28466909 aaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggata 28466977  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 34736824 - 34736756
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||| |||||||||||| |||||||||  |||||| |||||||| | || |||| ||||||||||||||    
T  34736824 aaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggata 34736756  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 5724721 - 5724822
Alignment:
Q  155 gaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatccaattttggtccctccagaagtgaaaccaaacat 254  Q
    |||||||||||||||||||   | |||   ||||||||| |||| || |||||||  ||||||||  |||||||| ||||| ||||||| ||||||||||    
T  5724721 gaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaatt-aattttggcccctctagaagtggaaccaaacat 5724819  T
Q  255 aca 257  Q
    |||    
T  5724820 aca 5724822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 579126 - 579191
Alignment:
Q  155 gaggcaaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatc 220  Q
    |||||||| ||| |||||||| ||||| ||||| ||||| | || ||||| |||||||||||||||    
T  579126 gaggcaaagtcagttctactcgagagcaatcaatcatgtcaaaatcagttttacatctctagaatc 579191  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 34026417 - 34026462
Alignment:
Q  35 attttgagtggattgattctaactaaaagtgagttgaggataaagt 80  Q
    |||||||||| |||||||||  ||||||||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataaagt 34026462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 882842 - 882778
Alignment:
Q  32 ttgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    |||| |||||||| ||||||||||  ||||| |||||||| | |||| || ||||||||||||||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggata 882778  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 2234305 - 2234341
Alignment:
Q  155 gaggcaaaatcaattctactcaagagccatcaaacat 191  Q
    ||||||||||||||||||||||||||| | |||||||    
T  2234305 gaggcaaaatcaattctactcaagagcaaccaaacat 2234341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 16540289 - 16540241
Alignment:
Q  279 tggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 327  Q
    ||||| |||||||| | |||| ||||||||||| |||||||||||||||    
T  16540289 tggtggggagaattgattttgatagaattgattatgtagaattgatttt 16540241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 2778673 - 2778605
Alignment:
Q  28 aaaattgattttgagtggattgattctaactaaaagtgagttgaggataaagtgctttatgtttggata 96  Q
    ||||||||||||  ||| | |||||||| ||||||||||||||| ||||||||| ||||| ||||||||    
T  2778673 aaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggata 2778605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 41891804 - 41891846
Alignment:
Q  289 aattaaatttgttagaattgattttgtagaattgattttagtt 331  Q
    |||||| |||| | |||||||||||||||||||||||||||||    
T  41891804 aattaattttgattgaattgattttgtagaattgattttagtt 41891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 28287257 - 28287301
Alignment:
Q  27 caaaattgattttgagtggattgattctaactaaaagtgagttga 71  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||    
T  28287257 caaaattgactttgagtgaattgattctagctaaaagtgagttga 28287301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 24587899 - 24587838
Alignment:
Q  159 caaaatcaattctactcaagagccatcaaacatgtgagaaacagttctacatctctagaatc 220  Q
    |||| |||||||||||||||||| | ||||||||| | || || ||||||| ||||||||||    
T  24587899 caaagtcaattctactcaagagcaaccaaacatgtcacaatcaattctacacctctagaatc 24587838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 40352553 - 40352493
Alignment:
Q  267 tgtttggcagtgtggtgtggagaattaaatttgttagaattgattttgtagaattgatttt 327  Q
    |||||||  ||| |||| |||||||| | |||| ||||||||||||||| |||||||||||    
T  40352553 tgtttggttgtgcggtgaggagaattgattttgatagaattgattttgtggaattgatttt 40352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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