View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_24 (Length: 351)
Name: NF7962_low_24
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 36628329 - 36628124
Alignment:
| Q |
3 |
caaaaacaaattcaaaaattgatttggtcataccgataacaaagcaaatgtatctctttcctaaaataatacactttggtcaactgtgtgannnnnnnnn |
102 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36628329 |
caaaaacaaattcaaaaattgatttggtgataccgataacaaagcaaatgtatctttttcctaaaataatacactttggtcaactgtgtgattttttttt |
36628230 |
T |
|
| Q |
103 |
nnnaccaaaacatacgttagttcatgcttcatactagtcttaatcttataatttatgcactatataaccacttgtggtaatgttaaggcagtacattcaa |
202 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36628229 |
tt-accaaaagatacgtttgttcatgcttcatactagtcttaatcttataatttatgcactatataaccacttgtggtattgttaaggcagtacattcaa |
36628131 |
T |
|
| Q |
203 |
tcaatat |
209 |
Q |
| |
|
||||||| |
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|
| T |
36628130 |
tcaatat |
36628124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 36628093 - 36627963
Alignment:
| Q |
205 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36628093 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
36627994 |
T |
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| Q |
305 |
acccactttcattcatagacaacattatttt |
335 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
36627993 |
acccactttcattcatagacaacattatttt |
36627963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 145 - 330
Target Start/End: Complemental strand, 36622917 - 36622731
Alignment:
| Q |
145 |
atcttataatttatgcactatataaccacttgtggtaatgttaaggcagtacattcaatcaatattaaagt-atttcatgaattaattaccatggaaata |
243 |
Q |
| |
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||||||||||| || || |||||||||||||||| || |||| | || |||||||||||||||| |||| || ||| ||| ||||||||||||||| |
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| T |
36622917 |
atcttataattcattcattatataaccacttgtgatatagttatgtcaatacattcaatcaatatacaagtcatagcatagattgattaccatggaaata |
36622818 |
T |
|
| Q |
244 |
gaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaacatt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
36622817 |
gaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttctttcatagacaacatt |
36622731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 36634207 - 36634104
Alignment:
| Q |
224 |
aattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcataga |
323 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||| |
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| T |
36634207 |
aattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttccactttctttaataga |
36634111 |
T |
|
| Q |
324 |
caacatt |
330 |
Q |
| |
|
||||||| |
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|
| T |
36634110 |
caacatt |
36634104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 34328889 - 34328990
Alignment:
| Q |
229 |
attaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaaca |
328 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||| |
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| T |
34328889 |
attaccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctttcatagacaaca |
34328988 |
T |
|
| Q |
329 |
tt |
330 |
Q |
| |
|
|| |
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|
| T |
34328989 |
tt |
34328990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 34319987 - 34320088
Alignment:
| Q |
235 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaacattattt |
334 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||| ||||| || |||||| ||| |
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|
| T |
34319987 |
atggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttatccactttctttcattgataacatttttt |
34320086 |
T |
|
| Q |
335 |
tt |
336 |
Q |
| |
|
|| |
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|
| T |
34320087 |
tt |
34320088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 45307192 - 45307140
Alignment:
| Q |
235 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactcc |
287 |
Q |
| |
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|||||||| |||||| |||| ||||||||||||||||||||||| |||||||| |
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|
| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcc |
45307140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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