View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_26 (Length: 333)
Name: NF7962_low_26
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 28 - 316
Target Start/End: Original strand, 4929593 - 4929871
Alignment:
| Q |
28 |
agctcagaaacatcccttgtagaagaattgaaatgatcaactaatagcttcaaattttattcaaaatccacattatccaatttgagctcttgaattcact |
127 |
Q |
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| T |
4929593 |
agctcagaaacatcccttgcagaagaattgaaatgatcaactaatagcttcaaattttattcaaaatccacattatccaatttgagctcttgaattcact |
4929692 |
T |
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| Q |
128 |
caataggtgacataagatcgcaaacttctcctagatcccattgtgcaaattggtgagaactattctgttttagcaaagaaaaaagctcatgtaacaacaa |
227 |
Q |
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| T |
4929693 |
caataggtgacataagatcgcaaacttctcctagatcccattgtgcaaattggtgagaac----------tagcaaagaaaaaagctcatgtaacaacaa |
4929782 |
T |
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| Q |
228 |
ctaaatgcatataaatattgtacaattaacctaacacttgatatttttatacggtgtttgtataagatgtcaattttctttgtctaaat |
316 |
Q |
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| T |
4929783 |
ctaaatgcatataaattttgtccaattaatctaacacttgatatttttatacggtgtttgtataagatgtcaattttctttgtctaaat |
4929871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4928835 - 4928870
Alignment:
| Q |
1 |
tgtttacaatcacaaataatggcaccaagctcagaa |
36 |
Q |
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| T |
4928835 |
tgtttacaatcagaaataatggcaccaagctcagaa |
4928870 |
T |
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