View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_low_35 (Length: 304)

Name: NF7962_low_35
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_low_35
NF7962_low_35
[»] chr4 (27 HSPs)
chr4 (229-304)||(41795835-41795910)
chr4 (17-125)||(6178394-6178501)
chr4 (17-125)||(41795630-41795737)
chr4 (229-304)||(30723537-30723612)
chr4 (17-125)||(49093767-49093873)
chr4 (229-304)||(1305930-1306005)
chr4 (229-304)||(6178600-6178675)
chr4 (229-304)||(21018388-21018463)
chr4 (229-304)||(49093608-49093683)
chr4 (229-303)||(40355214-40355288)
chr4 (229-304)||(31424926-31425001)
chr4 (229-304)||(49168697-49168772)
chr4 (214-304)||(37016385-37016475)
chr4 (214-304)||(50278319-50278409)
chr4 (235-304)||(44674647-44674716)
chr4 (214-304)||(8110331-8110421)
chr4 (244-304)||(51686294-51686354)
chr4 (50-125)||(55793333-55793407)
chr4 (247-304)||(50196510-50196567)
chr4 (238-302)||(14317791-14317855)
chr4 (91-125)||(1305813-1305847)
chr4 (91-125)||(21018282-21018316)
chr4 (91-125)||(30723420-30723454)
chr4 (91-125)||(31425084-31425118)
chr4 (91-125)||(49168863-49168897)
chr4 (255-304)||(40886459-40886508)
chr4 (238-302)||(12892088-12892152)
[»] chr2 (22 HSPs)
chr2 (229-304)||(17423640-17423715)
chr2 (17-125)||(3938136-3938244)
chr2 (17-125)||(43981881-43981988)
chr2 (229-304)||(3938335-3938410)
chr2 (229-304)||(15834442-15834517)
chr2 (229-304)||(30493757-30493832)
chr2 (229-304)||(43981707-43981782)
chr2 (229-304)||(5355157-5355232)
chr2 (229-304)||(43536500-43536575)
chr2 (225-304)||(29398397-29398476)
chr2 (214-304)||(6637873-6637963)
chr2 (229-304)||(28471714-28471791)
chr2 (229-304)||(39950674-39950746)
chr2 (55-125)||(17423813-17423883)
chr2 (229-304)||(10825714-10825789)
chr2 (229-303)||(25514853-25514924)
chr2 (51-125)||(15834600-15834673)
chr2 (91-125)||(5355323-5355357)
chr2 (91-125)||(30493632-30493666)
chr2 (91-125)||(43536375-43536409)
chr2 (244-304)||(36653307-36653367)
chr2 (221-301)||(40538711-40538791)
[»] chr5 (17 HSPs)
chr5 (229-304)||(19037959-19038034)
chr5 (17-125)||(19037754-19037861)
chr5 (214-304)||(28879784-28879871)
chr5 (229-304)||(8459-8534)
chr5 (229-304)||(28238529-28238604)
chr5 (229-304)||(30708233-30708308)
chr5 (229-304)||(8577335-8577410)
chr5 (214-304)||(38407632-38407722)
chr5 (214-303)||(7761730-7761819)
chr5 (214-304)||(5199946-5200036)
chr5 (91-125)||(8345-8379)
chr5 (91-125)||(8577221-8577255)
chr5 (91-125)||(27662460-27662494)
chr5 (91-125)||(28238412-28238446)
chr5 (246-304)||(38971221-38971279)
chr5 (235-304)||(42937464-42937533)
chr5 (244-304)||(15939821-15939881)
[»] chr3 (34 HSPs)
chr3 (229-304)||(46401891-46401966)
chr3 (17-125)||(46402064-46402171)
chr3 (17-125)||(49141116-49141223)
chr3 (17-125)||(54389485-54389592)
chr3 (229-304)||(2648368-2648443)
chr3 (214-304)||(46698092-46698182)
chr3 (229-304)||(34048611-34048686)
chr3 (229-304)||(42900952-42901027)
chr3 (229-304)||(49141322-49141397)
chr3 (229-304)||(54389311-54389386)
chr3 (232-304)||(50477572-50477644)
chr3 (221-304)||(47070970-47071053)
chr3 (221-304)||(52388397-52388480)
chr3 (229-301)||(2271848-2271920)
chr3 (214-302)||(50213944-50214032)
chr3 (235-304)||(16646681-16646750)
chr3 (235-304)||(9473462-9473531)
chr3 (229-304)||(4005206-4005281)
chr3 (221-304)||(20353721-20353804)
chr3 (49-125)||(34048785-34048860)
chr3 (244-304)||(41615435-41615495)
chr3 (244-304)||(48566000-48566060)
chr3 (229-304)||(36130656-36130731)
chr3 (238-304)||(42759823-42759889)
chr3 (238-304)||(44232891-44232957)
chr3 (229-304)||(600044-600126)
chr3 (17-52)||(34048834-34048869)
chr3 (50-125)||(42900787-42900861)
chr3 (91-125)||(46697984-46698018)
chr3 (91-125)||(50477452-50477486)
chr3 (244-301)||(30252902-30252959)
chr3 (244-304)||(6928305-6928365)
chr3 (238-302)||(16861577-16861641)
chr3 (238-298)||(42804765-42804825)
[»] chr7 (24 HSPs)
chr7 (17-125)||(9368000-9368107)
chr7 (229-304)||(15071079-15071154)
chr7 (229-304)||(9368198-9368273)
chr7 (229-304)||(35607187-35607262)
chr7 (229-304)||(41883726-41883801)
chr7 (229-304)||(48406544-48406619)
chr7 (211-304)||(5538329-5538422)
chr7 (229-304)||(17460058-17460133)
chr7 (229-304)||(17593081-17593156)
chr7 (232-304)||(17838139-17838211)
chr7 (229-304)||(10522016-10522091)
chr7 (235-304)||(34741898-34741967)
chr7 (50-125)||(17459893-17459967)
chr7 (50-125)||(17593247-17593321)
chr7 (221-304)||(47521765-47521848)
chr7 (50-125)||(48406710-48406784)
chr7 (238-301)||(9491796-9491859)
chr7 (215-304)||(27450473-27450559)
chr7 (238-304)||(16680639-16680705)
chr7 (238-304)||(17654875-17654941)
chr7 (91-125)||(35607062-35607096)
chr7 (91-125)||(41883892-41883926)
chr7 (221-298)||(36980732-36980809)
chr7 (244-304)||(13323219-13323279)
[»] chr6 (15 HSPs)
chr6 (17-125)||(6204509-6204616)
chr6 (17-125)||(11691476-11691583)
chr6 (229-304)||(27638934-27639009)
chr6 (230-304)||(22304416-22304490)
chr6 (229-304)||(6204335-6204410)
chr6 (229-304)||(11691302-11691377)
chr6 (229-304)||(30826414-30826489)
chr6 (17-125)||(27639086-27639193)
chr6 (229-304)||(31771242-31771317)
chr6 (212-303)||(2405836-2405927)
chr6 (91-125)||(22304591-22304625)
chr6 (91-125)||(30826297-30826331)
chr6 (244-301)||(32641675-32641732)
chr6 (246-302)||(2407406-2407462)
chr6 (244-304)||(3502168-3502228)
[»] chr1 (23 HSPs)
chr1 (214-304)||(3729124-3729214)
chr1 (229-304)||(26878895-26878970)
chr1 (230-304)||(13636797-13636871)
chr1 (229-304)||(19159206-19159281)
chr1 (231-304)||(19522085-19522158)
chr1 (221-304)||(21144115-21144198)
chr1 (229-304)||(31780463-31780538)
chr1 (235-304)||(52805053-52805122)
chr1 (229-297)||(470574-470642)
chr1 (244-304)||(8548275-8548335)
chr1 (229-304)||(50617688-50617763)
chr1 (238-303)||(22527181-22527246)
chr1 (50-125)||(19928234-19928308)
chr1 (221-302)||(51337086-51337167)
chr1 (244-304)||(94919-94979)
chr1 (244-303)||(11197043-11197102)
chr1 (91-125)||(8548435-8548469)
chr1 (91-125)||(13636678-13636712)
chr1 (91-125)||(19159369-19159403)
chr1 (91-125)||(26879061-26879095)
chr1 (238-304)||(45828755-45828821)
chr1 (237-302)||(35256216-35256281)
chr1 (221-302)||(47505528-47505609)
[»] chr8 (23 HSPs)
chr8 (229-304)||(1055712-1055787)
chr8 (229-304)||(15033561-15033636)
chr8 (229-304)||(23019083-23019158)
chr8 (229-304)||(26662633-26662708)
chr8 (229-304)||(42482302-42482377)
chr8 (17-81)||(486324-486388)
chr8 (221-304)||(22284-22367)
chr8 (229-304)||(486529-486604)
chr8 (229-304)||(41239350-41239425)
chr8 (214-304)||(34367405-34367495)
chr8 (238-304)||(34819421-34819487)
chr8 (238-304)||(30761083-30761149)
chr8 (212-304)||(5301104-5301196)
chr8 (244-304)||(35554768-35554828)
chr8 (244-304)||(40075517-40075577)
chr8 (50-125)||(42482137-42482211)
chr8 (238-304)||(20859193-20859259)
chr8 (238-302)||(45132918-45132982)
chr8 (221-304)||(39831539-39831622)
chr8 (91-125)||(22155-22189)
chr8 (91-125)||(1055878-1055912)
chr8 (91-125)||(23018958-23018992)
chr8 (91-125)||(26662799-26662833)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 41795835 - 41795910
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41795835 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 41795910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 6178394 - 6178501
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  6178394 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 6178492  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  6178493 aaagtagaa 6178501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 41795630 - 41795737
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  41795630 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 41795728  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  41795729 aaagtagaa 41795737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 30723537 - 30723612
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30723537 tcctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 30723612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 49093873 - 49093767
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| |||    
T  49093873 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtaaaaaaaa--ccatgaaattaaaaataatgtcatc 49093776  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  49093775 aaagtagaa 49093767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 1305930 - 1306005
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1305930 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 1306005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 6178600 - 6178675
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6178600 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 6178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 21018388 - 21018463
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  21018388 tcctgatcctgctgatggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccc 21018463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 49093683 - 49093608
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49093683 tcctgatcctgatgatggtgcctcctcctcagcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 49093608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 40355214 - 40355288
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40355214 tcctgatcctgctgatggtgcctcctcctcggcctatgggctctcctcctggtcaaaatcggcgcgatctgctcc 40355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 31425001 - 31424926
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  31425001 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccc 31424926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 49168772 - 49168697
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  49168772 tcctgatcctgctgatggtgcctcctcctcggcctatgggctctcctcctggtcaaaatcgacgcgatctgctccc 49168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 37016385 - 37016475
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||| ||| ||| || |||| ||||||||||||||||||||    
T  37016385 tactactggtcctggtcctggtcctgctgatggtgcctcctcctcggcctctggcctcgccttctagtcaaaatcggcgcgatctgctccc 37016475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 50278409 - 50278319
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||||||||||||| | | ||||||||||| ||||||| ||||||||||||    
T  50278409 tactactggtcctggtcctggtcttgctgatggtgcctcctcctcggcctctggccccgcctcctggtcaaaatcggctcgatctgctccc 50278319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 44674647 - 44674716
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||| |||||||||||||| ||||||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  44674647 tcctactgatggtgcctcctcctcggcctctggcctcgcctcctagtcaaaatcggcgcgatctgctccc 44674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 8110421 - 8110331
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| |  ||||| |||||||||| ||||||||||||| ||| |||||||| ||  |||||||||||||||||||    
T  8110421 tactactggtcctggtcctgctgatgctgctggtgcctcctcctcggcctctggcctcccctcctggccaatatcggcgcgatctgctccc 8110331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 51686354 - 51686294
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||||| ||| |||| ||||||  |||||||||||||||||||    
T  51686354 tggtgcctcctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccc 51686294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 55793407 - 55793333
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  55793407 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 55793333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 50196567 - 50196510
Alignment:
Q  247 tgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||||||||||| ||| |||||||||||  ||||| |||||||||||||    
T  50196567 tgcctcctcctcggcctctggcctcacctcctggtcaagatcggtgcgatctgctccc 50196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 14317855 - 14317791
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||| |||||||||| ||||| ||||||| ||| |||||||| ||  |||||||||||||||||    
T  14317855 tgctgctggtgcctcctcctcgtcctctggcctcgcctcctggccaacatcggcgcgatctgctc 14317791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 1305813 - 1305847
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  1305813 cccatgaaattaaaaataatgtcatcaaagtagaa 1305847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 21018282 - 21018316
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  21018282 cccatgaaattaaaaataatgtcatcaaagtagaa 21018316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 30723420 - 30723454
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  30723420 cccatgaaattaaaaataatgtcatcaaagtagaa 30723454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 31425118 - 31425084
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  31425118 cccatgaaattaaaaataatgtcatcaaagtagaa 31425084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 49168897 - 49168863
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  49168897 cccatgaaattaaaaataatgtcatcaaagtagaa 49168863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 40886459 - 40886508
Alignment:
Q  255 cctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||| |||||||||||  ||||| || ||||||||||    
T  40886459 cctcggcctctgggctcgcctcctggtcaatatcggtgcaatctgctccc 40886508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 12892152 - 12892088
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||| || |||| || ||||||||||||| ||| |||||||||||  |||||| ||||||||||    
T  12892152 tgctgctgttgccgcctcctcggcctctggcctcgcctcctggtcaatatcggcacgatctgctc 12892088  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 17423715 - 17423640
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17423715 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 17423640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 3938136 - 3938244
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| |||    
T  3938136 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtaaaaaaaaaaccatgaaattaaaaataatgtcatc 3938235  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  3938236 aaagtagaa 3938244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 43981988 - 43981881
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  43981988 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 43981890  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  43981889 aaagtagaa 43981881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 3938335 - 3938410
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3938335 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 3938410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 15834517 - 15834442
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15834517 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 15834442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 30493757 - 30493832
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30493757 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 30493832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 43981782 - 43981707
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43981782 tcctgatcctgatgatggtgtctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 43981707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 5355232 - 5355157
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  5355232 tcctgatcctgatgatggtgcctcatcctcggcctctaggctctcctcctggtcaaaatcggcgcgatctgctccc 5355157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 43536500 - 43536575
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  43536500 tcctgatcctgatgatggtgcctcctcctcagcctctggactctcctcctggtcaaaatcggcgcgatctgctccc 43536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 29398397 - 29398476
Alignment:
Q  225 ctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||  ||| |||||||    
T  29398397 ctgatcctggtcctgctgatggtgcctcctcctcggcctctggcctcacctcctggtcaaaatcggcatgatatgctccc 29398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 6637873 - 6637963
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| |  ||||| |||||||||| ||||||||||||| ||| |||||||||||  |||||||||||||||||||    
T  6637873 tactactggtcctggtcctgctgatgctgctggtgcctcctcctcggcctctggtctcccctcctggtcaatatcggcgcgatctgctccc 6637963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 28471791 - 28471714
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcc--tggtcagaatcggcgcgatctgctccc 304  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||  | |||| ||||||||||||||||||||    
T  28471791 tcctaatcctgctgatggtgcctcctcctcggcctctgggctcgcctccctttgtcaaaatcggcgcgatctgctccc 28471714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 39950746 - 39950674
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||   |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  39950746 tcctgatcctgctg---gtgcctcctcctcggcctctgggttcgcctcctggtcaaaatcggcgcgatctgctccc 39950674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 17423883 - 17423813
Alignment:
Q  55 aacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  17423883 aacctatttttgcacattaaacaaagtaaaaaaaaacccatgaaattaaaaataatgtgatcaaagtagaa 17423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 10825714 - 10825789
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||| | ||||||| ||||||||||||| ||| ||||||||||| ||||  ||||||||||||||    
T  10825714 tcctggtcctgctgacgatgcctcctcctcggcctctggtctcgcctcctggtcaaaatcaacgcgatctgctccc 10825789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 25514853 - 25514924
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    ||||| ||||||||||| |||||||   ||||||||||| ||| |||||||| ||  ||||||||||||||||||    
T  25514853 tcctggtcctgctgatgctgcctcc---tcggcctctggcctcgcctcctggccaatatcggcgcgatctgctcc 25514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 15834673 - 15834600
Alignment:
Q  51 aagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    ||||||||||| |||||||||||||||||||         || ||||||||||||||||||| ||||||||||||    
T  15834673 aagcaacctatatttgcacattaaacaaagtaaaaaaaatcc-atgaaattaaaaataatgtcatcaaagtagaa 15834600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 5355357 - 5355323
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  5355357 cccatgaaattaaaaataatgtcatcaaagtagaa 5355323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 30493632 - 30493666
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  30493632 cccatgaaattaaaaataatgtcatcaaagtagaa 30493666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 43536375 - 43536409
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  43536375 cccatgaaattaaaaataatgtcatcaaagtagaa 43536409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 36653307 - 36653367
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||| | ||| |||||||||||  ||| ||| |||||||||||    
T  36653307 tggtgcctcctcctcggcctctagcctcgcctcctggtcaagatcagcgagatctgctccc 36653367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 40538791 - 40538711
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgct 301  Q
    ||||||| ||||| |  ||||| |||||||||| ||||||||||||| ||| ||| ||||| |  ||||| ||||||||||    
T  40538791 ggtcctggtcctgcttatgctgctggtgcctcctcctcggcctctggcctcgcctactggtaatgatcggtgcgatctgct 40538711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 19037959 - 19038034
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19037959 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcacgatctgctccc 19038034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 19037754 - 19037861
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  19037754 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 19037852  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  19037853 aaagtagaa 19037861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 28879871 - 28879784
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| |||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28879871 tactactggtcctgatcctg---ctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 28879784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 8459 - 8534
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8459 tcctgatcctgctgatggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccc 8534  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 28238529 - 28238604
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  28238529 tcctgatcctgatgatggtgcctcctccccggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 28238604  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 30708308 - 30708233
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30708308 tcctgatcctgcagatagtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 30708233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 8577335 - 8577410
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||| |||| |||||||    
T  8577335 tcctgatcctgctgatggtgcctcctcctcggcctttgggctcgcctcctggtcaaaatcggcacgatttgctccc 8577410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 38407632 - 38407722
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| |||| || ||||| |||| |||||||||||||| ||||||||| ||| ||| ||||||||||| ||||||||||||||||||||    
T  38407632 tactactggtcatggtcctggtcctactgatggtgcctcctcctcggcctatggcctcgcctcctggtcaaaatcggcgcgatctgctccc 38407722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 7761819 - 7761730
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    |||||| ||||||| | ||| |||||||||| |||||||| ||||||||||||| ||| ||||||||||| |||||| ||||||||||||    
T  7761819 tactactggtcctggttctggtcctgctgatagtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggtgcgatctgctcc 7761730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 5200036 - 5199946
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| |  ||||| |||||||||| |||||||||||||  || |||||||||||  |||||||||||||||||||    
T  5200036 tactactggtcctggtcctgctgatgctgctggtgcctcctcctcggcctctggcttcgcctcctggtcaagatcggcgcgatctgctccc 5199946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 8345 - 8379
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  8345 cccatgaaattaaaaataatgtcatcaaagtagaa 8379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 8577221 - 8577255
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  8577221 cccatgaaattaaaaataatgtcatcaaagtagaa 8577255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 27662460 - 27662494
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  27662460 cccatgaaattaaaaataatgtcatcaaagtagaa 27662494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 28238412 - 28238446
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  28238412 cccatgaaattaaaaataatgtcatcaaagtagaa 28238446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 38971279 - 38971221
Alignment:
Q  246 gtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||| ||||||||| ||| ||| |||| ||||||  |||||||||||||||||||    
T  38971279 gtgcctcctcctcggcctttggcctcgcctcttggtcaagatcggcgcgatctgctccc 38971221  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 42937464 - 42937533
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||| |||| |||||||| ||| |||||| |  |  |||||||| ||||||||||    
T  42937464 tcctgctgatggtgcctcctcctcagcctctggcctcgcctccttgctaatatcggcgcaatctgctccc 42937533  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 15939881 - 15939821
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| || ||||||||||||| ||| |||||||  ||  |||||||||||||||||||    
T  15939881 tggtgccgcctcctcggcctctggcctcgcctcctgaccaatatcggcgcgatctgctccc 15939821  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 46401966 - 46401891
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46401966 tcctgatcctgctgatggtgcctccgcctcggcctctgggttctcctcctggtcagaatcggcgcgatctgctccc 46401891  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 46402171 - 46402064
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  46402171 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 46402073  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  46402072 aaagtagaa 46402064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 49141116 - 49141223
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  49141116 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 49141214  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  49141215 aaagtagaa 49141223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 54389592 - 54389485
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  54389592 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 54389494  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  54389493 aaagtagaa 54389485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 2648368 - 2648443
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2648368 tcctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 2648443  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 46698092 - 46698182
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46698092 tactactggtcctggtcttgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 46698182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 34048686 - 34048611
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34048686 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 34048611  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 42900952 - 42901027
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42900952 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 42901027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 49141322 - 49141397
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49141322 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 49141397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 54389386 - 54389311
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54389386 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 54389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 50477572 - 50477644
Alignment:
Q  232 tgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  50477572 tgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcagcgcgatctgctccc 50477644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 47070970 - 47071053
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||||  || ||||||||||| ||||||||||||||||||||    
T  47070970 ggtcctggtcccggtcctgctgatggtgcctcctcctcggcctctggcatcgcctcctggtcaaaatcggcgcgatctgctccc 47071053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 52388397 - 52388480
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||  || ||||||||||||||||    
T  52388397 ggtcctggtcctggtcctgctgatggtgcctcctcctcggcctctggcctcgcctcctggtcaagattggcgcgatctgctccc 52388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 2271848 - 2271920
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgct 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| ||| |||| ||||||||    
T  2271848 tcctgatcctgctgatggtgcctcctcctcggcctctgggctcgcctcctagtcaaaattggcgtgatctgct 2271920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 50213944 - 50214032
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    |||||| |||| || ||||| ||||| ||||||||||||| ||||||||||||| ||| |||||| |||| ||||||||||||||||||    
T  50213944 tactactggtcatggtcctggtcctgttgatggtgcctcctcctcggcctctggcctcgcctcctagtcaaaatcggcgcgatctgctc 50214032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 16646750 - 16646681
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||||    
T  16646750 tcctgctgatggtgcctcctcctcgacctctggcctcgcctcctggtcaaaatcggcacgatctgctccc 16646681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 9473531 - 9473462
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||| ||||  |||||||||||||||||||    
T  9473531 tcctgctgatggtgcctcctcctcggcctctgacctcgcctcctagtcaagatcggcgcgatctgctccc 9473462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 4005206 - 4005281
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||  |||| ||||||  |||||| ||||||||||||    
T  4005206 tcctggtcctgctgatggtgcctcctcctcggcctctggccttgcctcttggtcaagatcggcacgatctgctccc 4005281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 20353804 - 20353721
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||| |  ||||| |||||||||| ||||||||||||| |||  ||||||||||  |||||||||||||||||||    
T  20353804 ggtcctggtcctgctgatgctgctggtgcctcctcctcggcctctggcctcgtctcctggtcatgatcggcgcgatctgctccc 20353721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 34048860 - 34048785
Alignment:
Q  49 taaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    ||||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  34048860 taaagcaacctatatttgcacattaaacaaagtaaaaaaaa-cccatgaaattaaaaataatgtcatcaaagtagaa 34048785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 41615495 - 41615435
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||||| ||| |||||||||||  |||||||| ||||||||||    
T  41615495 tggtgcctcctcctcggcctctggcctcacctcctggtcaagatcggcgcaatctgctccc 41615435  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 48566060 - 48566000
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||||| ||  |||||||||||  |||||||||||||||||||    
T  48566060 tggtgcctcctcctcggcctctggcctaccctcctggtcaagatcggcgcgatctgctccc 48566000  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 36130731 - 36130656
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| || |||||||||||||||| ||||||||||||| ||  | || ||||||  |||||||||||||||||||    
T  36130731 tcctggtcgtgctgatggtgcctcctcctcggcctctggccttgcatcttggtcaagatcggcgcgatctgctccc 36130656  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 42759889 - 42759823
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||| ||| |||| ||||||  ||||||||||| |||||||    
T  42759889 tgctgctggtgcctcctcctcggcctctggcctcgcctcttggtcaagatcggcgcgatgtgctccc 42759823  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 44232957 - 44232891
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||| ||| ||||||| |||||||||||  ||||||||| |||||||||    
T  44232957 tgctgctggtgcctcctcctcgacctatgggctcgcctcctggtcaagatcggcgcgttctgctccc 44232891  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 600126 - 600044
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctct-------cctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||| ||||||||| |||| ||||||||||||| ||||       ||||||||||| ||||||||||||||||||||    
T  600126 tcctggtcctactgatggtggctcctcctcggcctctggcctctagcctcgcctcctggtcaaaatcggcgcgatctgctccc 600044  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 34048869 - 34048834
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaa 52  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34048869 ttatgttcataaagcaacctatatttgcacattaaa 34048834  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 42900787 - 42900861
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||| ||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  42900787 aaagcaacatatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 42900861  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 46697984 - 46698018
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  46697984 cccatgaaattaaaaataatgtcatcaaagtagaa 46698018  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 50477452 - 50477486
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  50477452 cccatgaaattaaaaataatgtcatcaaagtagaa 50477486  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 30252902 - 30252959
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgct 301  Q
    |||||||||| ||||||||||||| ||| ||||| ||| |  ||||||||||||||||    
T  30252902 tggtgcctcctcctcggcctctggcctcgcctccaggtaatgatcggcgcgatctgct 30252959  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 6928365 - 6928305
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||| ||| ||| ||||| ||| |||||||||||  |||||||||||||||||||    
T  6928365 tggtgcatcctccttggcatctggcctcgcctcctggtcaagatcggcgcgatctgctccc 6928305  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 16861577 - 16861641
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||| |||  ||| |||| ||||||||    
T  16861577 tgctgctggtgcctcctcctcggcctctggcctcgcctcctgttcaagatcagcgcaatctgctc 16861641  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 42804765 - 42804825
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatct 298  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||||| |  || ||||||||||    
T  42804765 tgctgttggtgcctcctcctcggcctctggcctcgcctcctggtaatgattggcgcgatct 42804825  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 9368000 - 9368107
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  9368000 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 9368098  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  9368099 aaagtagaa 9368107  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 15071079 - 15071154
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15071079 tcctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 15071154  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 9368198 - 9368273
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9368198 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 9368273  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 35607187 - 35607262
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35607187 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 35607262  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 41883801 - 41883726
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41883801 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 41883726  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 48406619 - 48406544
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48406619 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 48406544  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 5538329 - 5538422
Alignment:
Q  211 taatactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||| |||| || ||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  5538329 taatactactggtcatggtcctggtcctgctgatggtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggcgcgatctgctccc 5538422  T

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Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 17460058 - 17460133
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  17460058 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccc 17460133  T

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Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 17593156 - 17593081
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  17593156 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccc 17593081  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 17838211 - 17838139
Alignment:
Q  232 tgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||| ||||||| |||| |||||||||||||||    
T  17838211 tgatcctgctgatggtgccccctcctcggcctttgggctcgccttctggtcaaaatcagcgcgatctgctccc 17838139  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 10522091 - 10522016
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||  ||||||||||| ||| ||||||||||| ||||    
T  10522091 tcctgatcctgttgatggtgcctcctcctcggcctatgggcttgcctcctggtcaaaattggcgcgatctggtccc 10522016  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 34741967 - 34741898
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| |||||||||||  ||||||| |||| ||| ||||||||||| ||||||||||||||||||||    
T  34741967 tcctgctaatggtgcctccttctcggcccctggcctcgcctcctggtcaaaatcggcgcgatctgctccc 34741898  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 17459893 - 17459967
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  17459893 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 17459967  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 17593321 - 17593247
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  17593321 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 17593247  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 47521765 - 47521848
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||| |  ||||| |||||||||| ||||||||||||| ||| |||||||||||  |  ||||||||||||||||    
T  47521765 ggtcctggtcctgctgatgctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagacaggcgcgatctgctccc 47521848  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 48406784 - 48406710
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  48406784 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 48406710  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 9491796 - 9491859
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgct 301  Q
    ||||| |||||||||| ||||||||| ||| ||| ||||||||| |  ||||||||||||||||    
T  9491796 tgctggtggtgcctcctcctcggcctttggcctcgcctcctggtaatgatcggcgcgatctgct 9491859  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 27450473 - 27450559
Alignment:
Q  215 actacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||| ||||| |  ||||| ||||||||||   ||||||||||| ||| |||||||||||  || ||||||||||||||||    
T  27450473 actactggtcctggtcctgctgatgctgttggtgcctcc---tcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccc 27450559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 16680705 - 16680639
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||  ||| ||||||| |||  ||||||||||||| |||||    
T  16680705 tgctgctggtgcctcctcctcggcctctgacctcgcctcctgatcaagatcggcgcgatctactccc 16680639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 17654941 - 17654875
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||  ||| ||||||| |||  ||||||||||||| |||||    
T  17654941 tgctgctggtgcctcctcctcggcctctgacctcgcctcctgatcaagatcggcgcgatctactccc 17654875  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 35607062 - 35607096
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  35607062 cccatgaaattaaaaataatgtcatcaaagtagaa 35607096  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 41883926 - 41883892
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  41883926 cccatgaaattaaaaataatgtcatcaaagtagaa 41883892  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 36980809 - 36980732
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatct 298  Q
    ||||||| ||||| |  ||||| | |||||||| ||||||||||||| ||| |||||||| ||  |||||||||||||    
T  36980809 ggtcctggtcctgctgatgctgttcgtgcctcctcctcggcctctggtctcgcctcctggccaatatcggcgcgatct 36980732  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 13323279 - 13323219
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| |||||| ||||   ||| ||||||||||| ||| ||||||||||||||||    
T  13323279 tggtgcctcctcctcggtctctatcctcgcctcctggtcataattggcgcgatctgctccc 13323219  T

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Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 6204616 - 6204509
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  6204616 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 6204518  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  6204517 aaagtagaa 6204509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 11691583 - 11691476
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||    
T  11691583 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt-aaaaaaaacccatgaaattaaaaataatgtcatc 11691485  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  11691484 aaagtagaa 11691476  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 27639009 - 27638934
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27639009 tcctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 27638934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 22304490 - 22304416
Alignment:
Q  230 cctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22304490 cctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 22304416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 6204410 - 6204335
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6204410 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 6204335  T

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Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 11691377 - 11691302
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11691377 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 11691302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 30826414 - 30826489
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30826414 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 30826489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 27639193 - 27639086
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatc 116  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||||||||||||||||| |||    
T  27639193 ttatgttcttaaagcaacctatatttgcacattaaagcaacctatatttgcacattaaacaaagt-aaaaaaagcccatgaaattaaaaataatgtcatc 27639095  T
Q  117 aaagtagaa 125  Q
    |||||||||    
T  27639094 aaagtagaa 27639086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 31771317 - 31771242
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||||| |||||||||||    
T  31771317 tcctggtcctgctgatgttgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggcgtgatctgctccc 31771242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 2405836 - 2405927
Alignment:
Q  212 aatactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    |||||||| ||||||| ||||| |  || || |||||||||| ||||||||||| | ||| |||||||||||  ||||||||||||||||||    
T  2405836 aatactactggtcctggtcctgctgatgttgctggtgcctcctcctcggcctctagcctcgcctcctggtcaagatcggcgcgatctgctcc 2405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 22304625 - 22304591
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  22304625 cccatgaaattaaaaataatgtcatcaaagtagaa 22304591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 30826297 - 30826331
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  30826297 cccatgaaattaaaaataatgtcatcaaagtagaa 30826331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 32641675 - 32641732
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgct 301  Q
    |||||||||| |||||| |||||| ||| ||||||||| |  ||||||||||||||||    
T  32641675 tggtgcctcctcctcggtctctggcctcgcctcctggtaatgatcggcgcgatctgct 32641732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 2407462 - 2407406
Alignment:
Q  246 gtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    |||||||| |||||| |||||| ||| |||||||||||  |||| ||||||||||||    
T  2407462 gtgcctcctcctcggactctggcctcgcctcctggtcaagatcgacgcgatctgctc 2407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 3502228 - 3502168
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||| ||||||||||||| ||| |||||||||||  || |||| |||||||||||    
T  3502228 tggtgcttcctcctcggcctctggcctcgcctcctggtcaagataggcgtgatctgctccc 3502168  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 3729124 - 3729214
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  3729124 tactactggtcctggtcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaattggcgcgatctgctccc 3729214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 26878970 - 26878895
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26878970 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 26878895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 13636797 - 13636871
Alignment:
Q  230 cctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  13636797 cctgatcctgctgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccc 13636871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 19159281 - 19159206
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  19159281 tcctgatcctgctgatggtgcctcctcctgggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccc 19159206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 19522085 - 19522158
Alignment:
Q  231 ctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||||||    
T  19522085 ctgatcctgctgatggtgcctcctcctcggcctctggcctcgcctcttggtcaaaatcggcgcgatctgctccc 19522158  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 21144198 - 21144115
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||| ||||| ||||||||||||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||||    
T  21144198 ggtcctggtcctggtcctgttgatggtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcagcgcgatctgctccc 21144115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 31780463 - 31780538
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  31780463 tcctggtcctgctgatggtgcctcctcctcggcctctaggctcgcctcctggtcaaaatcggcgcgatctgttccc 31780538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 52805122 - 52805053
Alignment:
Q  235 tcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||| |||||| |||||||||    
T  52805122 tcctgctgatggtgcctcctcctcggcctctggcctcgcctcctggtcaaaattggcgcggtctgctccc 52805053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 470642 - 470574
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatc 297  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||||||||||    
T  470642 tcctggtcctgctgatgctgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggcgcgatc 470574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 8548335 - 8548275
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  8548335 tggtgcctcctcctcggcctttgggctctcctcctggtcaaaatcgacgcgatctgctccc 8548275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 50617688 - 50617763
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||||| ||| ||| ||||||||||| | ||| ||||||||||| |||||| |||||||||||||    
T  50617688 tcctggtcctgctgatgatgcatcctcctcggcctctagcctcgcctcctggtcaaaatcggtgcgatctgctccc 50617763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 22527246 - 22527181
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    ||||| |||||||||| ||||||||||||| ||| |||||||||||  || |||||||||||||||    
T  22527246 tgctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctcc 22527181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 19928308 - 19928234
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  19928308 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 19928234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 51337167 - 51337086
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||||| ||||| |  ||||| |||||||||| |||| |||||||| ||| |||||||| ||  |||||||||||||||||    
T  51337167 ggtcctgttcctgctgatgctgctggtgcctcctcctcagcctctggcctcgcctcctggccaatatcggcgcgatctgctc 51337086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 94919 - 94979
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||| | ||| |||||||||||  || ||||||||||||||||    
T  94919 tggtgcctcctcctcggcctctagcctcgcctcctggtcaagataggcgcgatctgctccc 94979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 11197102 - 11197043
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctcc 303  Q
    |||||||||| | ||||||||||| ||| |||||| ||||  ||||||||||||||||||    
T  11197102 tggtgcctcctcttcggcctctggcctcgcctcctagtcaagatcggcgcgatctgctcc 11197043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 8548469 - 8548435
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  8548469 cccatgaaattaaaaataatgtcatcaaagtagaa 8548435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 13636678 - 13636712
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  13636678 cccatgaaattaaaaataatgtcatcaaagtagaa 13636712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 19159403 - 19159369
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  19159403 cccatgaaattaaaaataatgtcatcaaagtagaa 19159369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 26879095 - 26879061
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  26879095 cccatgaaattaaaaataatgtcatcaaagtagaa 26879061  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 45828821 - 45828755
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||| | ||| ||||||| | ||| |||||||||||  |||||||||||||||||||    
T  45828821 tgctgctggtgccttctccttggcctctagcctcgcctcctggtcaagatcggcgcgatctgctccc 45828755  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 35256216 - 35256281
Alignment:
Q  237 ctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    |||||| ||||| |||| ||||||||||||| ||| |||||| | ||  |||||||||||||||||    
T  35256216 ctgctgttggtgtctcctcctcggcctctggcctcgcctccttgccaatatcggcgcgatctgctc 35256281  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 47505609 - 47505528
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||||| ||||| |  ||||| |||||||||| ||||||||||||| ||| |||| ||||||  || |||| |||||||||    
T  47505609 ggtcctggtcctgctgatgctgttggtgcctcctcctcggcctctggcctcgcctcatggtcaagataggcgtgatctgctc 47505528  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 1055787 - 1055712
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1055787 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 1055712  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 15033561 - 15033636
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  15033561 tcctgatcctgctgatggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccc 15033636  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 23019083 - 23019158
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23019083 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 23019158  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 26662708 - 26662633
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26662708 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 26662633  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 42482302 - 42482377
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42482302 tcctgatcctgatgatggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 42482377  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 486324 - 486388
Alignment:
Q  17 ttatgctcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt 81  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  486324 ttatgttcataaagcaacctatatttgcacattaaagcaacctatttttgcacattaaacaaagt 486388  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 22284 - 22367
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  22284 ggtcctgatcctgatcttgatgatggtgcctcctcctcggcctttgggctctcctccaggtcaaaatcggcgcgatctgctccc 22367  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 486529 - 486604
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||||||  | |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  486529 tcctgatcctaataatggagcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccc 486604  T

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Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 41239350 - 41239425
Alignment:
Q  229 tcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||| ||||||||||||    
T  41239350 tcctggtcctgctgatggtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggcacgatctgctccc 41239425  T

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Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 34367405 - 34367495
Alignment:
Q  214 tactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||| ||||||| ||||| ||||||||||| ||||||| |||||||| |||| ||| ||||||||||| |||| |||||||||||||||    
T  34367405 tactactggtcctggtcctggtcctgctgatgctgcctcctcctcggcccctggcctcgcctcctggtcaaaatcagcgcgatctgctccc 34367495  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 34819421 - 34819487
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||| ||| |||||||||||  |||||||||||||||||||    
T  34819421 tgctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagatcggcgcgatctgctccc 34819487  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 30761083 - 30761149
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||| ||| |||||||| ||  |||||||||||||||||||    
T  30761083 tgctgctggtgcctcctcctcggcctctggcctcgcctcctggccaatatcggcgcgatctgctccc 30761149  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 5301104 - 5301196
Alignment:
Q  212 aatactacgggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||| |||| || ||||| |  ||||| |||||||||| ||||||||||||| ||| |||||| ||||  ||||||||||||| |||||    
T  5301104 aatactactggtcttggtcctgctgatgctgctggtgcctcctcctcggcctctggcctcgcctcctagtcaagatcggcgcgatctactccc 5301196  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 35554828 - 35554768
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||||  ||| ||||||||||| ||||||| ||||||||||||    
T  35554828 tggtgcctcctcctcggcctctgtcctcgcctcctggtcaaaatcggcacgatctgctccc 35554768  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 40075517 - 40075577
Alignment:
Q  244 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    |||||||||| ||||||||||||| ||| |||| ||||||  |||||||||||||||||||    
T  40075517 tggtgcctcctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccc 40075577  T

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Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 42482137 - 42482211
Alignment:
Q  50 aaagcaacctatttttgcacattaaacaaagtnnnnnnnnncccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||    
T  42482137 aaagcaacctatatttgcacattaaacaaagtaaaaaaag-cccatgaaattaaaaataatgtcatcaaagtagaa 42482211  T

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Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 20859259 - 20859193
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||| |||||||||| ||||||||||||| ||| |||| ||||||  ||||||||||| |||||||    
T  20859259 tgctgctggtgcctcctcctcggcctctggcctcgcctcttggtcaagatcggcgcgatttgctccc 20859193  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 45132982 - 45132918
Alignment:
Q  238 tgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctc 302  Q
    ||||| ||||||| || ||||||||||||| |||||||||||| ||  ||||||| |||||||||    
T  45132982 tgctgctggtgccgcctcctcggcctctggcctctcctcctggccaatatcggcgtgatctgctc 45132918  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 39831539 - 39831622
Alignment:
Q  221 ggtcctgatcctgatcctgctgatggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccc 304  Q
    ||||||| ||||| |  ||||| || ||| ||| ||||||||||||| ||| |||||||||||  || ||||||||||||||||    
T  39831539 ggtcctggtcctgctgatgctgctgttgcatcctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccc 39831622  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 22155 - 22189
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  22155 cccatgaaattaaaaataatgtcatcaaagtagaa 22189  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 1055912 - 1055878
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  1055912 cccatgaaattaaaaataatgtcatcaaagtagaa 1055878  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 23018958 - 23018992
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  23018958 cccatgaaattaaaaataatgtcatcaaagtagaa 23018992  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 26662833 - 26662799
Alignment:
Q  91 cccatgaaattaaaaataatgtgatcaaagtagaa 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  26662833 cccatgaaattaaaaataatgtcatcaaagtagaa 26662799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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