View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_36 (Length: 293)
Name: NF7962_low_36
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 34415472 - 34415748
Alignment:
| Q |
1 |
aggtattttaatttattttgagaggaagccaattcttttattttattttgtcctcattctcttggtgtcgaaagtgttttccattttgtttacatgtaat |
100 |
Q |
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| T |
34415472 |
aggtattttaatttattttgagaggaagccaattcttttgttttattttgtcctcattctcttggtgtctaatgtgttttccattttgtttacatgtaat |
34415571 |
T |
|
| Q |
101 |
tgttcattttgtgtttatactgacatttcgacacattattatgctgccgtgatttatatgtgctggttttaaaatttacagttactaatcnnnnnnnctt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
34415572 |
tgttcattttgtgtttatactgacatttcggcacattattatgctgccgtgatttatctgtgctggttttaaaatttacagttactaatctttttttctt |
34415671 |
T |
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| Q |
201 |
tctacattgtccaggctattaaagtagttaatttagatcaaaagactaaaatggttacggagctggatggtcatatt |
277 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415672 |
tctacattgtccaggctattgaagtagttaatttagatcaaaagactaaaatggttacggagctggatggtcatatt |
34415748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 155801 - 155727
Alignment:
| Q |
202 |
ctacattgtccag-gctattaaagtagttaatttagatcaaaagactaaaatggttacggagctggatggtcatatt |
277 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
155801 |
ctacattgtccagcgctattaaaatagttaatttagatcaaaagac--aaatggttacggagcttgatggtcatatt |
155727 |
T |
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