View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_37 (Length: 269)
Name: NF7962_low_37
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 4206940 - 4206724
Alignment:
| Q |
3 |
cttgggttcccaccaatagataaaccaagatatttaaacataatttttctctaagttttcattagaaa-gttgtctctgttctccatagtgaacaccatt |
101 |
Q |
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| T |
4206940 |
cttgggttcccaccaatagacaaaccaagatatttaaacataatttttctctaagttttcattagaaaagctgtctctcttctccatagtgaacaccatt |
4206841 |
T |
|
| Q |
102 |
cactctgacaagtgacaatagtgtctcacataacatacaaattctatatgttgtcataattcttcaaattaactaaataaatgcaggaaaaagttttatt |
201 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4206840 |
cactctgacaagtgacaatactgtctcacataacatacaaattctatatgttgtcataattcttcaaattaactaaataaatgcaggaaaaagttttatt |
4206741 |
T |
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| Q |
202 |
ttccatttggttcaatt |
218 |
Q |
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||||||||||||||||| |
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| T |
4206740 |
ttccatttggttcaatt |
4206724 |
T |
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