View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_39 (Length: 240)
Name: NF7962_low_39
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 626792 - 627013
Alignment:
| Q |
6 |
tttggtgtttgaggattgaggaaatatccctgactaattcaagaaatttgatgtaaattagtggttaattatgtcataatgcaagattaaggttttttag |
105 |
Q |
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| T |
626792 |
tttggggtttgaggattgaggaaatatccctgactaattcaagaaatttgatgtaaattagtggttaattatgtcataatgcaagattaaggttttttag |
626891 |
T |
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| Q |
106 |
gagttatattctatgagatgaaa-----atgttagtcaagcaaatgaaacaagacattactcatcaaaaacataatacataattttgttatacaaatact |
200 |
Q |
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| T |
626892 |
gagttatattctatgagatgaaaatgttatgttagtcaagcaaatgaaacaagacattacacatcaaaaacataatacataattttgttatacaaatact |
626991 |
T |
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| Q |
201 |
taaactaaggtttccaaatata |
222 |
Q |
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|||||||||| ||||||||||| |
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| T |
626992 |
taaactaaggcttccaaatata |
627013 |
T |
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