View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_4 (Length: 533)
Name: NF7962_low_4
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 8504640 - 8505142
Alignment:
| Q |
13 |
aatatctttcaaaggcacaacaacatcactaaggatataactatcaggaagtcctggataagacataactacacttaacacattagtgtgaccatcaaac |
112 |
Q |
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| T |
8504640 |
aatatctttcaaaggcacaa---catcactaaggatataactatcaggaagtcctggataagacaaaactacacttaacacattagtgtgagcatcaaac |
8504736 |
T |
|
| Q |
113 |
cttatcacaacattagcctctcttccattttccaaaacccatggtgtagtgcttattgacttaatacagtttacattgatgccaatatgtctgtttatct |
212 |
Q |
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| T |
8504737 |
cttaccaaaacattagcctctcttccattttccaaaacccatgatgtagtgcttattgacttaatacagttaacattgatgccaatatgtctatttattt |
8504836 |
T |
|
| Q |
213 |
ttggatcccaagtattatgaaaagtatctatttcaactgcaactgtttgaatcgttttattgtaagtttcgctgttgaaaactccgagaaatcctgcacg |
312 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8504837 |
ttggatcccaagtattatgaaaagtgtcaatttcaactgcaactgtttgaatcgatttattgtaagtttcgctgttgaaaactccgagaaatcctgcacg |
8504936 |
T |
|
| Q |
313 |
cccgatgttttgtggctgagtatcaaccggtgcaatgaagaaggccaaaccgtcggcaacattgctactataaggagcagttatagcaaaagtgaagagt |
412 |
Q |
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| T |
8504937 |
cccgatgttttgtggctgagtatcaaccggtgcaatgaagaaggccaaaccgtcggcaacattgctactataaggagcagttatggcaaaagtgaagagt |
8505036 |
T |
|
| Q |
413 |
gtttcgaagttagccacgtctcctgttttgctatcccaaatatgaataggagcagaatatagagctctgccaatagagttcttgactgccttggtaagtt |
512 |
Q |
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| T |
8505037 |
gtttcgaagttagccacgtctcctgttttgctatcccaaatatgaataggagcagaatatagagctctgccaatagagttcttgactgccttggtaagtt |
8505136 |
T |
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| Q |
513 |
gtaact |
518 |
Q |
| |
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|||||| |
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| T |
8505137 |
gtaact |
8505142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 506
Target Start/End: Complemental strand, 25371068 - 25370793
Alignment:
| Q |
233 |
aaagtatctatttcaactgcaactgtttgaatcgttttattgtaagtttcgctgttgaaaactccgagaaatcctgcacgcccgatgttttgtggctgag |
332 |
Q |
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||||| || |||||||||||||| |||||||| | ||| |||||||||| ||| | ||||||||| || ||||| || | || || |||| || |
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| T |
25371068 |
aaagtgtcaatttcaactgcaacagtttgaattgattttttgtaagttttgctatcgaaaactccaaggtatcctccatgatgaattgatttcggcttag |
25370969 |
T |
|
| Q |
333 |
tatcaaccggtgcaatgaagaaggccaaaccgtcggcaacattgctactataaggagcagttatagcaaaagtgaagagtgtttcgaagttagccacgtc |
432 |
Q |
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|||||| |||||||||||||| || | |||||| |||||||| | ||| ||| || ||||| | ||| |||||| |||| ||||||||||| |
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| T |
25370968 |
tatcaattggtgcaatgaagaatgcaagaccgtctgcaacattataagtattaggcgccgttattgtaaaggtgaaggtagtttgaaagttagccacact |
25370869 |
T |
|
| Q |
433 |
tcctgttttgctatcccaaatatg--aataggagcagaatatagagctctgccaatagagttcttgactgccttgg |
506 |
Q |
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|| ||||||||||||||||| || |||||| || ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
25370868 |
accggttttgctatcccaaatgtgtgaataggggcggaataaagagctctaccaatagagttcttgactgccttgg |
25370793 |
T |
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