View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_low_40 (Length: 231)

Name: NF7962_low_40
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_low_40
NF7962_low_40
[»] chr7 (9 HSPs)
chr7 (1-213)||(42470338-42470550)
chr7 (1-213)||(5484192-5484404)
chr7 (1-213)||(28427548-28427756)
chr7 (1-200)||(25212894-25213093)
chr7 (1-200)||(25216437-25216636)
chr7 (107-213)||(7605639-7605745)
chr7 (126-212)||(5266509-5266595)
chr7 (1-94)||(5266080-5266173)
chr7 (3-87)||(19250718-19250802)
[»] chr8 (2 HSPs)
chr8 (1-213)||(6931125-6931337)
chr8 (3-178)||(12608537-12608712)
[»] chr6 (1 HSPs)
chr6 (1-213)||(8326960-8327172)
[»] chr1 (3 HSPs)
chr1 (1-153)||(35562310-35562462)
chr1 (1-213)||(23992138-23992348)
chr1 (1-185)||(34336419-34336603)
[»] chr4 (2 HSPs)
chr4 (110-213)||(44258289-44258392)
chr4 (108-213)||(49609066-49609170)
[»] chr2 (1 HSPs)
chr2 (1-118)||(17161511-17161628)
[»] chr3 (1 HSPs)
chr3 (1-133)||(20226180-20226312)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42470338 - 42470550
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  42470338 aaatgtatctttgaggatatcaagcattttgtccaagaaattggcgctcaagtgttatcttctctgcatcatatcttgaaagcttttgctcatcctacct 42470437  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    ||||  |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42470438 ctcatagtgttcagcagcctgcacgtattgtcagttggcaacatcctagtatgaattcagtagctcttaatgttgatggcagtgtattccttgattccaa 42470537  T
Q  201 tctgggaggtttt 213  Q
      |||||||||||    
T  42470538 cttgggaggtttt 42470550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5484404 - 5484192
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  5484404 aaatgtatctttgaggatatcaaacattctatccaagaaattggcgctcaagtgttatcttctctgcatcatatcttgaaagcttttgctcatcctacct 5484305  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  5484304 ctcacagtgttcagcagcctgcacgtattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatggcaatgtattccttgattccaa 5484205  T
Q  201 tctgggaggtttt 213  Q
      ||||| |||||    
T  5484204 cttgggaagtttt 5484192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28427548 - 28427756
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  28427548 aaatgtatctttgaggatatcaagcattctgtccaagaaattagcactcaagtgttatcttctctgcatcatatcttgaaagcttttgctcatcctacct 28427647  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    ||||| |||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28427648 ctcacagtgttcagcagcctgcacgtatt----gttggcaacgtcctagtatgaattcagtagctcttaatgttgatggcagtgtattccttgattccaa 28427743  T
Q  201 tctgggaggtttt 213  Q
      |||||||||||    
T  28427744 cttgggaggtttt 28427756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25212894 - 25213093
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||| ||||||||||||||||||||||| || |||||||||||||  | |||||||||||| |||||||||  |||||||||  |||| | |||||| ||    
T  25212894 aaatatatctttgaggatatcaagcattatgcccaagaaattggcaataaagtgttatcatttctgcatcacgtcttgaaagtgtttgcttatcctatct 25212993  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    |||||  ||||||||||||||||| |||||||||||| ||| |  |||||||  ||||||||||||||||||||||||| | ||| ||||| ||||||||    
T  25212994 ctcacattgttcagcagcctgcacgtattgtcagttgacaatgagctagtatagattcagtagctcttaatgttgatggtaatgtgttcctcgattccaa 25213093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25216437 - 25216636
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||| ||||||||||||||||||||||| || |||||||||||||  | |||||||||||| |||||||||  |||||||||  |||| | |||||| ||    
T  25216437 aaatatatctttgaggatatcaagcattatgcccaagaaattggcaataaagtgttatcatttctgcatcacgtcttgaaagtgtttgcttatcctatct 25216536  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    |||||  ||||||||||||||||| |||||||||||| ||| |  |||||||  ||||||||||||||||||||||||| | ||| ||||| ||||||||    
T  25216537 ctcacattgttcagcagcctgcacgtattgtcagttgacaatgagctagtatagattcagtagctcttaatgttgatggtaatgtgttcctcgattccaa 25216636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 7605639 - 7605745
Alignment:
Q  107 gtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaatctggg 206  Q
    |||||||||||| ||||| |||||||||||| |||||| |||||||||||| |||| |||||||||||||||| |||||||| |||||||||||  || |    
T  7605639 gtgttcagcagcttgcacgtattgtcagttgacaacgttctagtatgaattaagtacctcttaatgttgatggtagtgtatttcttgattccaacttgag 7605738  T
Q  207 aggtttt 213  Q
    |||||||    
T  7605739 aggtttt 7605745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 5266509 - 5266595
Alignment:
Q  126 tattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaatctgggaggttt 212  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||| |||||||| | ||| |||| |||||||||  ||||||||||    
T  5266509 tattgtcagttggcaacgacctagtatggattcactagctcttaaagttgatggcaatgtgttccatgattccaacttgggaggttt 5266595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5266080 - 5266173
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatc 94  Q
    ||||| ||||||||| | ||||| |||| ||||||||||||||||  |||||||||||||||| ||| |||| |||| |||| ||||| |||||    
T  5266080 aaatgcatctttgagcacatcaaacattgtgtccaagaaattggcaatcaagtgttatcatctttgcgtcatgtcttaaaagtttttgctcatc 5266173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 19250718 - 19250802
Alignment:
Q  3 atgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagctttt 87  Q
    |||||||||||| ||||| || |||| | ||||||| ||||| | ||||||||| || | | |||||||||||||||||||||||    
T  19250718 atgtatctttgaagatattaaacattttttccaagacattggtgttcaagtgttttcttatttgcatcatatcttgaaagctttt 19250802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6931337 - 6931125
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  6931337 aaatgtatctttgaggatatcaagcattctgtccaagaaattggtgctcaagtgttatcttctctgcaccatatcttgaaagcttttgctcatcctacct 6931238  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6931237 ctcacagtgttcagcagcctgcacgtattatcagttggcaacgtaatagtatgaattcagtagctcttaatgttgatggcagtgtattccttgattccaa 6931138  T
Q  201 tctgggaggtttt 213  Q
      |||||||||||    
T  6931137 cttgggaggtttt 6931125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 12608712 - 12608537
Alignment:
Q  3 atgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacctct 102  Q
    |||||||||||||||||| ||||||| ||||||||| |||| | || ||  ||||||   ||| |||||| ||||||||| ||||| |  |  |  ||||    
T  12608712 atgtatctttgaggatattaagcattttgtccaagacattgacactaaaaggttatctcttctacatcatgtcttgaaagattttgcttttgttgtctct 12608613  T
Q  103 caccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatg 178  Q
    |||  |||||| |||| | | ||||| |||| ||||| ||| |||||| || ||||||||||  ||||||||||||    
T  12608612 cacattgttcaacagcttcctcatatcgtcacttggctacgacctagtgtggattcagtagcctttaatgttgatg 12608537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 8326960 - 8327172
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||  | |||||||||    
T  8326960 aaatgtatctttgagaatatcaagcattttgtccaagaaattggcactcaagtgttatcatttctgcatcatgtcttgaaaactttttcttatcctacct 8327059  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaa 200  Q
    |||||   |||||||||||| | |||||||| |||||||||||  |||||||| |||| |||||||||||||||||||   |||| ||||| || |||||    
T  8327060 ctcacatagttcagcagcctccgcatattgttagttggcaacgatctagtatggattctgtagctcttaatgttgatgcttgtgtgttcctcgagtccaa 8327159  T
Q  201 tctgggaggtttt 213  Q
      |||||||||||    
T  8327160 cttgggaggtttt 8327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 35562310 - 35562462
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| ||| |||||||||||||||  || |||||||||||||||||| |||||||||||    
T  35562310 aaatgtatctttgaggatatcaaacattttgttcaagaaattggcactcgagtgttatcatctctcaattatatcttgaaagcttttgctcatcctacct 35562409  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatg 153  Q
    |||||  |||||| |||| |  |  |||||||||||||||||| |||||||||    
T  35562410 ctcacaatgttcaccagcttatatgtattgtcagttggcaacgacctagtatg 35562462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 23992348 - 23992138
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||| ||||||| || ||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||  |||  |||||    
T  23992348 aaatctatctttaagcatatcaaacattctgtccaataaattagcgctcatgtgttatcatctctgcatcatatcttgaatgcttttg--cat-atacct 23992252  T
Q  101 ctcaccgtgttcagcagcctgcacata-ttgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattcca 199  Q
    | |||  ||||| | ||||||||| || ||||  |||||||| | ||||||||| ||| ||||||||||||||||||||  | ||| ||||| |||||||    
T  23992251 cgcacaatgttcggtagcctgcacgtatttgtacgttggcaatgacctagtatggatttagtagctcttaatgttgatgacaatgtcttcctcgattcca 23992152  T
Q  200 atctgggaggtttt 213  Q
    |  |||||||||||    
T  23992151 acttgggaggtttt 23992138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 34336603 - 34336419
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||||||||||| ||||||||||||||| ||||||||||||| || |||| |||||||||  | || ||||| |||||| |||||||||| |||||||||    
T  34336603 aaatgtatctttaaggatatcaagcattatgtccaagaaattagcactcaggtgttatcacttgtgtatcatgtcttgatagcttttgtttatcctacct 34336504  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgt 185  Q
    |||||  ||||||  ||| |||   |||||||| ||||| |||  ||| |||| |||||||  || ||||| ||||||| |||||    
T  34336503 ctcacattgttcaatagcttgcttgtattgtcacttggctacgatctaatatggattcagtttctattaatattgatggtagtgt 34336419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 44258289 - 44258392
Alignment:
Q  110 ttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaatctgggagg 209  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||    
T  44258289 ttcagcagcctgcatgtattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatggtaatgtattccttgattccaacttgggagg 44258388  T
Q  210 tttt 213  Q
    ||||    
T  44258389 tttt 44258392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 49609170 - 49609066
Alignment:
Q  108 tgttcagcagcctgcacatattgtcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatgggagtgtattccttgattccaatctggga 207  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  |||||    
T  49609170 tgttcagcagcctgcacgtatt-tcagttggcaacgtcctagtatgaattcagtagctcttaatgttgatggcagtgtattccttaattccaacttggga 49609072  T
Q  208 ggtttt 213  Q
    ||||||    
T  49609071 ggtttt 49609066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17161511 - 17161628
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    |||| |||||||||||||||||| |||||| |||||||||||  | |||||||||||| |||||||||||||||||||||||| |||| | |||||| ||    
T  17161511 aaatatatctttgaggatatcaaccattctatccaagaaattaacactcaagtgttattatctctgcatcatatcttgaaagcatttgcttatcctatct 17161610  T
Q  101 ctcaccgtgttcagcagc 118  Q
    |||||  |||||||||||    
T  17161611 ctcacaatgttcagcagc 17161628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 20226312 - 20226180
Alignment:
Q  1 aaatgtatctttgaggatatcaagcattctgtccaagaaattggcgctcaagtgttatcatctctgcatcatatcttgaaagcttttgttcatcctacct 100  Q
    ||||||||||||||| |||||||||||| |||| |||| |||| | ||||| ||||||    | |||||||| ||||||||||||||| | |||||||||    
T  20226312 aaatgtatctttgagaatatcaagcattatgtctaagatattgacactcaattgttatttcttatgcatcatgtcttgaaagcttttgcttatcctacct 20226213  T
Q  101 ctcaccgtgttcagcagcctgcacatattgtca 133  Q
    ||||   |||||||||| |||||||||||||||    
T  20226212 ctcatattgttcagcagtctgcacatattgtca 20226180  T

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