View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_41 (Length: 226)
Name: NF7962_low_41
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 10979984 - 10980166
Alignment:
| Q |
24 |
tcgatccagacaacccttcttcctctcatcttcgaccaaaaccaattttcatatgatcacaaaaataaaacccttcaagccttaaactatcatctcatct |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
10979984 |
tcgatccagacaacccttcttcctctcatcgtcgaccaaaaccaattttcatatgatcacaaaaatgaaacccttcaagccctaaactatcatctcatct |
10980083 |
T |
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| Q |
124 |
tctcaccgaacccttcaaaccctaaccctgtaatctctacccatggattcatctcaatagaatcataacccatcatctcgttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10980084 |
tctcaccgaacccttcaaaccctaaccctgtaatctctacccatggattcatcttaatagaatcataacccatcatctcgttc |
10980166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 18761356 - 18761174
Alignment:
| Q |
24 |
tcgatccagacaacccttcttcctctcatcttcgaccaaaaccaattttcatatgatcacaaaaataaaacccttcaagccttaaactatcatctcatct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
18761356 |
tcgatccagacaacccttcttcctctcatcgtcgaccaaaaccaattttcatatgatcacaaaaatgaaacccttcaagccctaaactatcatctcatct |
18761257 |
T |
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| Q |
124 |
tctcaccgaacccttcaaaccctaaccctgtaatctctacccatggattcatctcaatagaatcataacccatcatctcgttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18761256 |
tctcaccgaacccttcaaaccctaaccctgtaatctttacccatggattcatcttaatagaatcataacccatcatctcgttc |
18761174 |
T |
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