View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_42 (Length: 214)
Name: NF7962_low_42
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 11390423 - 11390243
Alignment:
| Q |
20 |
cttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcat |
119 |
Q |
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| T |
11390423 |
cttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcat |
11390324 |
T |
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| Q |
120 |
ccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
200 |
Q |
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| T |
11390323 |
ccatccacccgaaactctatccgacctcactccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
11390243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 11433761 - 11433933
Alignment:
| Q |
25 |
gaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatc |
124 |
Q |
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| T |
11433761 |
gaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcataatcgactccggaatcaaaaccattccatctttcttcatccatc |
11433860 |
T |
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| Q |
125 |
cactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
197 |
Q |
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| T |
11433861 |
cacctgaaaccctatctgacctcactccacgatcagatttcccccaaccgaaaatccccacaatcgacctctc |
11433933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 11423145 - 11423308
Alignment:
| Q |
34 |
aaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaa |
133 |
Q |
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| T |
11423145 |
aaagccgtgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaa |
11423244 |
T |
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| Q |
134 |
ctctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
197 |
Q |
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| T |
11423245 |
tcctatctgacctcactccacgatcagatttcccccaaccggaaatccccacaatcgacctctc |
11423308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 11427898 - 11428055
Alignment:
| Q |
40 |
gtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactctat |
139 |
Q |
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|||||||||||||||||||| |||| | ||||||||| ||| |||| ||||||||||||||| ||||| ||||| || || |||| ||||||||||| |
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| T |
11427898 |
gtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattcacccacccgaaactctat |
11427997 |
T |
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| Q |
140 |
ccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
197 |
Q |
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|||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11427998 |
ccgatctcactccacgatcagatttcccccaaccagaaattcccacaatcgacctctc |
11428055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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