View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7962_low_43 (Length: 214)

Name: NF7962_low_43
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7962_low_43
NF7962_low_43
[»] chr7 (7 HSPs)
chr7 (1-206)||(5516255-5516460)
chr7 (84-159)||(28885482-28885557)
chr7 (83-149)||(31448374-31448440)
chr7 (84-159)||(19989079-19989154)
chr7 (113-159)||(9077554-9077600)
chr7 (84-145)||(32553683-32553744)
chr7 (69-101)||(43174411-43174443)
[»] chr2 (10 HSPs)
chr2 (83-159)||(12457017-12457093)
chr2 (82-157)||(33810615-33810690)
chr2 (84-149)||(9154145-9154210)
chr2 (112-161)||(19246479-19246528)
chr2 (111-160)||(21924835-21924884)
chr2 (113-157)||(14949263-14949307)
chr2 (111-159)||(16152564-16152612)
chr2 (84-164)||(36887316-36887396)
chr2 (84-160)||(38985126-38985202)
chr2 (111-159)||(43939437-43939485)
[»] chr4 (5 HSPs)
chr4 (83-159)||(32564829-32564905)
chr4 (97-159)||(4473058-4473120)
chr4 (114-159)||(7209088-7209133)
chr4 (83-160)||(42576916-42576993)
chr4 (127-159)||(32564872-32564904)
[»] scaffold0009 (1 HSPs)
scaffold0009 (97-160)||(143364-143427)
[»] chr8 (6 HSPs)
chr8 (83-161)||(38125582-38125660)
chr8 (81-159)||(13481307-13481384)
chr8 (82-159)||(15196500-15196577)
chr8 (113-159)||(4410796-4410842)
chr8 (80-149)||(24802565-24802634)
chr8 (127-159)||(38125627-38125659)
[»] chr3 (4 HSPs)
chr3 (84-159)||(42380551-42380626)
chr3 (84-159)||(42409265-42409340)
chr3 (98-159)||(23505583-23505644)
chr3 (97-159)||(33896666-33896728)
[»] chr1 (5 HSPs)
chr1 (85-159)||(7255134-7255208)
chr1 (111-160)||(24679121-24679170)
chr1 (99-140)||(25089319-25089360)
chr1 (76-145)||(31922855-31922924)
chr1 (81-149)||(46836387-46836455)
[»] chr6 (2 HSPs)
chr6 (85-160)||(30416922-30416997)
chr6 (111-159)||(6865239-6865287)
[»] chr5 (4 HSPs)
chr5 (83-149)||(3103151-3103217)
chr5 (82-159)||(32636225-32636302)
chr5 (113-159)||(21743014-21743060)
chr5 (111-159)||(41328622-41328670)
[»] scaffold0064 (1 HSPs)
scaffold0064 (82-159)||(22371-22448)
[»] scaffold0263 (1 HSPs)
scaffold0263 (111-159)||(13373-13421)
[»] scaffold0002 (1 HSPs)
scaffold0002 (111-159)||(92001-92049)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5516460 - 5516255
Alignment:
Q  1 ttattggcttcaggtctacttcatgtcatcattgattttgattttaaacaacttgttgacaatgttcacaatgtcaaatataatactccctccgatccta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||    
T  5516460 ttattggcttcaggtctacttcatgtcatcattgattttgatcttaaacaacttgttgacaatgttcacaatgtcaaatataatactctctctaacccta 5516361  T
Q  101 tatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaaatctaaatatggctctaccataagtaattgaagagtcgtt 200  Q
    ||||||| | || |||||||||||| ||| |||||||||||||||| || |||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  5516360 tatgtaagcaccattttattaaaggtaaatggtgcttacatataggaacggagggagtaactctaaatatggctctaccatagataattgaagagtcgtt 5516261  T
Q  201 cttctc 206  Q
     |||||    
T  5516260 attctc 5516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 28885557 - 28885482
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||||||  | ||||||||| | ||||||||||| ||| ||| ||||||||||||||||||| ||| |||||    
T  28885557 tactccctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatagggacggagagagta 28885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 31448440 - 31448374
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggac 149  Q
    |||||| |||||  ||||||| ||| | ||||||||||| | |||||||||||||||||||||||||    
T  31448440 atactctctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagggac 31448374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 19989154 - 19989079
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||| ||||||  ||||||| ||| | || |||||||| ||||||| |||||||||||||||| || |||||||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 9077554 - 9077600
Alignment:
Q  113 cttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||| ||| |||| ||| ||||||||||||||||||||||||    
T  9077554 cttttattagagggaaagagtgtttacatatagggacagagggagta 9077600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 32553683 - 32553744
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatag 145  Q
    |||||||||||  ||||||||||||| ||||||||||| || |||| | || ||||||||||    
T  32553683 tactccctccgtccctatatgtaaacacccttttattagagacaaatgatgtttacatatag 32553744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 43174443 - 43174411
Alignment:
Q  69 caatgtcaaatataatactccctccgatcctat 101  Q
    ||||||||||| |||||||||||||||||||||    
T  43174443 caatgtcaaatttaatactccctccgatcctat 43174411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 12457017 - 12457093
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||  ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12457017 atactccctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagggacagagggagta 12457093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 33810615 - 33810690
Alignment:
Q  82 aatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggag 157  Q
    |||||||||| ||  ||||||||||| | ||||||||||| ||| |||  |||||||||||||||||| |||||||    
T  33810615 aatactcccttcgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagggacggagggag 33810690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 9154210 - 9154145
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggac 149  Q
    |||||||||||  ||||||| ||| | ||||||||||| ||| |||||||| ||||||||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagggac 9154145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 19246528 - 19246479
Alignment:
Q  112 ccttttattaaaggcaaagggtgcttacatatagggacagagggagtaaa 161  Q
    |||||||||| ||| ||| | ||||||||||||| |||||||||||||||    
T  19246528 ccttttattagaggaaaatgatgcttacatatagagacagagggagtaaa 19246479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 21924884 - 21924835
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    ||||||||||| ||| ||| |||||||| |||||||||| ||||||||||    
T  21924884 cccttttattagaggtaaaaggtgcttatatatagggacggagggagtaa 21924835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 14949263 - 14949307
Alignment:
Q  113 cttttattaaaggcaaagggtgcttacatatagggacagagggag 157  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||||    
T  14949263 cttttattagaggcaaatggtgcttacatatagagacggagggag 14949307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 16152564 - 16152612
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||| || ||||||||||||| ||||| |||| |||||||||    
T  16152564 cccttttattagagacaaagggtgcttatatatatggacggagggagta 16152612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 36887396 - 36887316
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaaatct 164  Q
    |||||||||||  ||||||||||||| || |||||||| ||| |||   ||||||||||||  ||| ||||||||| ||||    
T  36887396 tactccctccgtccctatatgtaaacaccattttattataggaaaaaaatgcttacatatatagacggagggagtatatct 36887316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 38985126 - 38985202
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    |||||||||||  ||||||| ||| | | ||||||||| ||| ||| |||||||| |||||||||| || |||||||    
T  38985126 tactccctccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagggacggaaggagtaa 38985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 43939485 - 43939437
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||| |||||||  |||||||||||||||||| |||| ||||    
T  43939485 cccttttattagaggcaaatagtgcttacatatagggacggaggaagta 43939437  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 32564905 - 32564829
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||  ||||||||||| | ||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  32564905 atactccctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 4473120 - 4473058
Alignment:
Q  97 cctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||| | || |||||||| |||||||| |||||||||||||||||| ||| |||||    
T  4473120 cctatatgtaagcacctttttattagaggcaaagagtgcttacatatagggacggagagagta 4473058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 7209088 - 7209133
Alignment:
Q  114 ttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||| || ||||| |||||||||||||||||| |||||||||    
T  7209088 ttttattagagacaaagagtgcttacatatagggacggagggagta 7209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 42576993 - 42576916
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    |||||||||||| |||||||| ||| | || |||||||| |||||||  ||||||| ||||| | || ||||||||||    
T  42576993 atactccctccgttcctatatctaagcaccattttattagaggcaaattgtgcttatatataagaacggagggagtaa 42576916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 32564872 - 32564904
Alignment:
Q  127 aaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||||||||||||| |||||||||    
T  32564872 aaagggtgcttacatatagggacggagggagta 32564904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 143364 - 143427
Alignment:
Q  97 cctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  143364 cctatatgtaaacacccttttattagaggcaaaggatgcttacatatagggacggagggagtaa 143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 38125660 - 38125582
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaaa 161  Q
    ||||||||||||  ||||||||||| | ||||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagtaaa 38125582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 13481384 - 13481307
Alignment:
Q  81 taatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||||  | ||||| |||||||| |||||||| ||| ||| |||||||||||||| | ||||||||||||    
T  13481384 taatactccctccgtccttatatttaaactccattttattagaggtaaatggtgcttacatata-gaacagagggagta 13481307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 15196577 - 15196500
Alignment:
Q  82 aatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||||||||  ||||||| ||| | ||||||||||| | | ||| | ||||||||||||||||| |||||||||    
T  15196577 aatactccctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagta 15196500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 4410842 - 4410796
Alignment:
Q  113 cttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||| || ||||||||||||| |||||||||| |||||||||    
T  4410842 cttttattagagacaaagggtgcttatatatagggacggagggagta 4410796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 24802634 - 24802565
Alignment:
Q  80 ataatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggac 149  Q
    |||||||||  ||||  ||||||| ||| | ||||||||||| | ||||| |||||||||||||||||||    
T  24802634 ataatactctatccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagggac 24802565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 38125627 - 38125659
Alignment:
Q  127 aaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||||||||||||| |||||||||    
T  38125627 aaagggtgcttacatatagggacggagggagta 38125659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 42380626 - 42380551
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||||||  ||||||| ||||  ||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  42380626 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacggatggagta 42380551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 42409340 - 42409265
Alignment:
Q  84 tactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||||||  ||||||| ||||  ||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  42409340 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacggatggagta 42409265  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 23505583 - 23505644
Alignment:
Q  98 ctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||| |||| || ||||||    
T  23505583 ctatatctaaacacccttttattaaaggcaaagggtgcttacgtataaggacggaaggagta 23505644  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 33896666 - 33896728
Alignment:
Q  97 cctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||| ||| | |||||| |||| ||||||| |||| |||||||||||||| |||||||||    
T  33896666 cctatatataagcaccctttcattagaggcaaatggtgtttacatatagggacggagggagta 33896728  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 7255208 - 7255134
Alignment:
Q  85 actccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    |||||||||| |||||||||||| | ||||||||||| ||| |||  |||||||||||||||||| |||||||||    
T  7255208 actccctccgttcctatatgtaagcacccttttattagagggaaaatgtgcttacatatagggacggagggagta 7255134  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 24679121 - 24679170
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    ||||||||||||||| |||| ||| |||||| ||||||| ||||||||||    
T  24679121 cccttttattaaagggaaagagtgtttacatttagggacggagggagtaa 24679170  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 25089360 - 25089319
Alignment:
Q  99 tatatgtaaactcccttttattaaaggcaaagggtgcttaca 140  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  25089360 tatatctaaacacccttttattaaaggcaaatggtgcttaca 25089319  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 31922924 - 31922855
Alignment:
Q  76 aaatataatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatag 145  Q
    ||||||| ||||| |||||  ||||||| ||| | ||||||||||||||||||| | || ||||||||||    
T  31922924 aaatatattactctctccgtccctatatctaagcacccttttattaaaggcaaaagatgtttacatatag 31922855  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 46836455 - 46836387
Alignment:
Q  81 taatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggac 149  Q
    ||||||||| ||||  ||||||| ||| | ||||||||||| |||||||  ||||||||||||| ||||    
T  46836455 taatactccttccgtccctatatctaagcacccttttattagaggcaaaatgtgcttacatataaggac 46836387  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 30416997 - 30416922
Alignment:
Q  85 actccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagtaa 160  Q
    ||||||||||  ||||||||||| |  |||||||||| |||||||| || ||||||||||||||| ||||||||||    
T  30416997 actccctccgcccctatatgtaagcatccttttattagaggcaaagagttcttacatatagggacggagggagtaa 30416922  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 6865239 - 6865287
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||| | ||||||| |||||||||| ||||||||||||||||    
T  6865239 cccttttattagatgcaaaggatgcttacatacagggacagagggagta 6865287  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 3103151 - 3103217
Alignment:
Q  83 atactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggac 149  Q
    ||||||| |||| |||||||| ||||| ||||||||||| ||| |||||||||||| ||||||||||    
T  3103151 atactccatccgttcctatatataaacacccttttattagaggtaaagggtgcttatatatagggac 3103217  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 32636302 - 32636225
Alignment:
Q  82 aatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||| ||||| |||||||||||||| ||||||||||| |||||||  ||  ||||||||| |||| |||||||||    
T  32636302 aatactctctccgttcctatatgtaaacacccttttattagaggcaaaaagtatttacatataaggacggagggagta 32636225  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 21743060 - 21743014
Alignment:
Q  113 cttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||| |||||||| ||||||||||||| |||| |||||||||    
T  21743060 cttttattagaggcaaagagtgcttacatataaggacggagggagta 21743014  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 41328622 - 41328670
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||| ||| |||||||||||||||| |||||| | |||||||    
T  41328622 cccttttattagagggaaagggtgcttacatacagggacggggggagta 41328670  T

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Target: scaffold0064 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 22371 - 22448
Alignment:
Q  82 aatactccctccgatcctatatgtaaactcccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||||||||||| |||||||| ||||| || |||||||| | || || ||||||||| ||||||||| || ||||||    
T  22371 aatactccctccgttcctatatataaacaccattttattagatgctaaaggtgcttacgtatagggacggaaggagta 22448  T

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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 13421 - 13373
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||| ||||| | ||||| ||||||||||||||||||| |||||||||    
T  13421 cccttctattagatgcaaaaggtgcttacatatagggacggagggagta 13373  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 92049 - 92001
Alignment:
Q  111 cccttttattaaaggcaaagggtgcttacatatagggacagagggagta 159  Q
    ||||| ||||| | ||||| ||||||||||||||||||| |||||||||    
T  92049 cccttctattagatgcaaaaggtgcttacatatagggacggagggagta 92001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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