View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7962_low_5 (Length: 530)
Name: NF7962_low_5
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 38950493 - 38949978
Alignment:
| Q |
1 |
acgtcaccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagaggggaagaggaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950493 |
acgtcaccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagaggggaagaggaagag |
38950394 |
T |
|
| Q |
101 |
cgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950393 |
cgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcac |
38950294 |
T |
|
| Q |
201 |
ctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950293 |
ctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactct |
38950194 |
T |
|
| Q |
301 |
ccacagggtaaatttgtta-tttcttttaatttaagttcaacattactggaaatgttggaaagtaatagctaactcaataaaatgtccatacagaatgct |
399 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950193 |
ccacagggtaaatttgttattttcttttaatttgagttcaacattactggaaatgttggaaagtaatagctaactcaataaaatgtccatacagaatgct |
38950094 |
T |
|
| Q |
400 |
atgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggcaacactgtgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38950093 |
atgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggcaacactgtgt |
38949994 |
T |
|
| Q |
500 |
ttgatggcgaacttga |
515 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38949993 |
ttgatggcgaacttga |
38949978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 136 - 306
Target Start/End: Complemental strand, 38942922 - 38942752
Alignment:
| Q |
136 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
235 |
Q |
| |
|
||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38942922 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
38942823 |
T |
|
| Q |
236 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
306 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
38942822 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
38942752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 390 - 505
Target Start/End: Complemental strand, 38942667 - 38942552
Alignment:
| Q |
390 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggc |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38942667 |
acagaatgctatgttcgttccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggc |
38942568 |
T |
|
| Q |
490 |
aacactgtgtttgatg |
505 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
38942567 |
aacactgtgttcgatg |
38942552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 38942990 - 38942936
Alignment:
| Q |
29 |
gaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagag |
86 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38942990 |
gaagatgaagatgaagaggatgagtggagg---ccacatcatcagaaaagcagaagag |
38942936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University